Mercurial > repos > davidvanzessen > igblast_human

comparison tool_dependencies.xml @ 33:413fe007965e draft

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Uploaded
author davidvanzessen
date Tue, 24 Sep 2013 09:42:58 -0400
parents a8a3bb59d0f9
children 8b2161007a67
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32:a8a3bb59d0f9 33:413fe007965e
17 </action> 17 </action>
18 <action type="set_environment"> 18 <action type="set_environment">
19 <environment_variable name="IGDATA" action="set_to">$INSTALL_DIR/ncbi-igblast-1.0.0</environment_variable> 19 <environment_variable name="IGDATA" action="set_to">$INSTALL_DIR/ncbi-igblast-1.0.0</environment_variable>
20 </action> 20 </action>
21 21
22 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_V</action>
23 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_V.nhr</action>
24 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_V.nin</action>
25 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_V.nog</action>
26 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_V.nsd</action>
27 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_V.nsi</action>
28 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_V.nsq</action>
29 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_V.phr</action>
30 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_V.pin</action>
31 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_V.pog</action>
32 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_V.psd</action>
33 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_V.psi</action>
34 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_V.psq</action>
35 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_V_prot</action>
36
22 <action type="make_directory">$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data</action> 37 <action type="make_directory">$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data</action>
23 <action type="make_directory">$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</action> 38 <action type="make_directory">$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</action>
39
40 <action type="move_file">
41 <source>human_V</source>
42 <destination>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</destination>
43 </action>
24 44
25 <action type="download_by_url">
26 ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_V*
27 </action>
28 <action type="move_file">
29 <source>human_V*</source>
30 <destination>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human/</destination>
31 </action>
32 <action type="move_directory_files">
33 <source_directory>.</source_directory>
34 <destination_directory>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</destination_directory>
35 </action>
36 </actions> 45 </actions>
37 </install> 46 </install>
38 <readme> 47 <readme>
39 Downloads igBlast with the human_V internal data file. 48 Downloads igBlast with the human_V internal data file.
40 </readme> 49 </readme>