Mercurial > repos > davidvanzessen > from_imgt_clonal_pairs
diff from_imgt.xml @ 0:5560672b1ca4 draft default tip
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| author | davidvanzessen |
|---|---|
| date | Fri, 24 Jul 2015 04:44:39 -0400 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/from_imgt.xml Fri Jul 24 04:44:39 2015 -0400 @@ -0,0 +1,29 @@ +<tool id="from_imgt_clonal_pairs" name="IMGT to Paired Clonal Sequences" version="1.0"> + <description>Comparison of clonal sequences in paired samples</description> + <command interpreter="bash"> +from_imgt.sh $out_file + #for $i, $f in enumerate($patients) +"$f.name" "$f.cellcount" "$f.receptor" "$len($f.samples)" + #for $j, $g in enumerate($f.samples) +"${g.sname}" "${g.file}" + #end for + #end for + </command> + <inputs> + <repeat name="patients" title="Patient" min="1" default="1"> + <param name="name" type="text" label="Patient name" /> + <param name="cellcount" type="text" label="Cell Count" /> + <param name="receptor" type="text" label="Receptor" /> + <repeat name="samples" title="Sample" min="1" max="2" default="1"> + <param name="sname" type="text" label="Sample name" /> + <param name="file" type="data" label="Data to Process" /> + </repeat> + </repeat> + + </inputs> + <outputs> + <data format="tabular" name="out_file" /> + </outputs> + <help> + </help> +</tool>