Mercurial > repos > davidvanzessen > from_imgt_clonal_pairs
comparison from_imgt.xml @ 0:5560672b1ca4 draft default tip
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| author | davidvanzessen |
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| date | Fri, 24 Jul 2015 04:44:39 -0400 |
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| -1:000000000000 | 0:5560672b1ca4 |
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| 1 <tool id="from_imgt_clonal_pairs" name="IMGT to Paired Clonal Sequences" version="1.0"> | |
| 2 <description>Comparison of clonal sequences in paired samples</description> | |
| 3 <command interpreter="bash"> | |
| 4 from_imgt.sh $out_file | |
| 5 #for $i, $f in enumerate($patients) | |
| 6 "$f.name" "$f.cellcount" "$f.receptor" "$len($f.samples)" | |
| 7 #for $j, $g in enumerate($f.samples) | |
| 8 "${g.sname}" "${g.file}" | |
| 9 #end for | |
| 10 #end for | |
| 11 </command> | |
| 12 <inputs> | |
| 13 <repeat name="patients" title="Patient" min="1" default="1"> | |
| 14 <param name="name" type="text" label="Patient name" /> | |
| 15 <param name="cellcount" type="text" label="Cell Count" /> | |
| 16 <param name="receptor" type="text" label="Receptor" /> | |
| 17 <repeat name="samples" title="Sample" min="1" max="2" default="1"> | |
| 18 <param name="sname" type="text" label="Sample name" /> | |
| 19 <param name="file" type="data" label="Data to Process" /> | |
| 20 </repeat> | |
| 21 </repeat> | |
| 22 | |
| 23 </inputs> | |
| 24 <outputs> | |
| 25 <data format="tabular" name="out_file" /> | |
| 26 </outputs> | |
| 27 <help> | |
| 28 </help> | |
| 29 </tool> |