Mercurial > repos > davidvanzessen > combined_immune_repertoire_pipeline

comparison combined.sh @ 6:fc186246d291 draft

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Uploaded
author davidvanzessen
date Fri, 22 Nov 2013 08:20:08 -0500
parents ba2ef103d26e
children e6f28d0a0f14
comparison
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5:ba2ef103d26e 6:fc186246d291
7 imageDir=${@:(-1):1} 7 imageDir=${@:(-1):1}
8 dir="$(cd "$(dirname "$0")" && pwd)" 8 dir="$(cd "$(dirname "$0")" && pwd)"
9 fileCount=`expr $# - 3` 9 fileCount=`expr $# - 3`
10 array=("$@") 10 array=("$@")
11 echo "<html><h3>Progress</h3><table><tr><td>info</td></tr>" > $html 11 echo "<html><h3>Progress</h3><table><tr><td>info</td></tr>" > $html
12 for var in "$@"
13 do
14 echo "$var" >> $html
15 done
16 echo "<tr><td>-----------------------------------</td></tr>" >> $html 12 echo "<tr><td>-----------------------------------</td></tr>" >> $html
17 limit=`expr $fileCount / 2` 13 limit=`expr $fileCount / 2`
18 14
19 function blastAndParse { 15 function blastAndParse {
20 echo "<tr><td>Starting blast of $2</td></tr>" >> $html 16 echo "<tr><td>Starting blast of $2</td></tr>" >> $html