Mercurial > repos > davidvanzessen > clonal_sequences_in_paired_samples

diff CLL.xml @ 3:f9316f7676cc draft

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Uploaded
author davidvanzessen
date Tue, 26 Aug 2014 09:53:22 -0400
parents c5ac9a871b26
children
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--- a/CLL.xml	Mon Aug 25 03:38:07 2014 -0400
+++ b/CLL.xml	Tue Aug 26 09:53:22 2014 -0400
@@ -1,10 +1,12 @@
 <tool id="vct_clonal_sequences" name="Clonal Sequences in paired samples" version="1.0">
 	<description>Comparison of clonal sequences in paired samples</description>
 	<command interpreter="bash">
-		wrapper.sh $in_file $out_file $out_file.files_path
+		wrapper.sh $in_file $out_file $out_file.files_path $min_freq $min_cells
 	</command>
 	<inputs>
-	<param name="in_file" format="tabular" type="data" label="Data to Process" />
+		<param name="in_file" format="tabular" type="data" label="Data to Process" />
+		<param name="min_freq" type="text" label="Minimum Frequency, between 0 and 100 in percentage" value='0'/>
+		<param name="min_cells" type="text" label="Minimum cell count" value='0'/>
 	</inputs>
 	<outputs>
 		<data format="html" name="out_file" />