Mercurial > repos > davidvanzessen > clonal_sequences_in_paired_samples

comparison CLL.xml @ 3:f9316f7676cc draft

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author davidvanzessen
date Tue, 26 Aug 2014 09:53:22 -0400
parents c5ac9a871b26
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2:8d562506f4f9 3:f9316f7676cc
1 <tool id="vct_clonal_sequences" name="Clonal Sequences in paired samples" version="1.0"> 1 <tool id="vct_clonal_sequences" name="Clonal Sequences in paired samples" version="1.0">
2 <description>Comparison of clonal sequences in paired samples</description> 2 <description>Comparison of clonal sequences in paired samples</description>
3 <command interpreter="bash"> 3 <command interpreter="bash">
4 wrapper.sh $in_file $out_file $out_file.files_path 4 wrapper.sh $in_file $out_file $out_file.files_path $min_freq $min_cells
5 </command> 5 </command>
6 <inputs> 6 <inputs>
7 <param name="in_file" format="tabular" type="data" label="Data to Process" /> 7 <param name="in_file" format="tabular" type="data" label="Data to Process" />
8 <param name="min_freq" type="text" label="Minimum Frequency, between 0 and 100 in percentage" value='0'/>
9 <param name="min_cells" type="text" label="Minimum cell count" value='0'/>
8 </inputs> 10 </inputs>
9 <outputs> 11 <outputs>
10 <data format="html" name="out_file" /> 12 <data format="html" name="out_file" />
11 </outputs> 13 </outputs>
12 <help> 14 <help>