Mercurial > repos > davidvanzessen > clonal_sequences_in_paired_samples

diff ALL.xml @ 29:5ab17bdf2530 draft

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Uploaded
author davidvanzessen
date Fri, 22 May 2015 09:06:04 -0400
parents eb5b569b44dd
children
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--- a/ALL.xml	Tue May 19 08:13:49 2015 -0400
+++ b/ALL.xml	Fri May 22 09:06:04 2015 -0400
@@ -1,12 +1,16 @@
 <tool id="vct_clonal_sequences" name="Clonal Sequences in paired samples" version="1.0">
 	<description>Comparison of clonal sequences in paired samples</description>
 	<command interpreter="bash">
-		wrapper.sh $in_file $out_file $out_file.files_path $min_freq $min_cells
+		wrapper.sh $in_file $out_file $out_file.files_path $min_freq $min_cells $merge_on
 	</command>
 	<inputs>
 		<param name="in_file" format="tabular" type="data" label="Data to Process" />
 		<param name="min_freq" type="text" label="Minimum Frequency, between 0 and 100 in percentage" value='0'/>
 		<param name="min_cells" type="text" label="Minimum cell count" value='0'/>
+		<param name="merge_on" type="select" label="Merge On">
+				<option value="Clone_Sequence">Clone_Sequence</option>
+				<option value="V_J_CDR3">V+J+CDR3</option>
+		</param>
 	</inputs>
 	<outputs>
 		<data format="html" name="out_file" />