Mercurial > repos > davidvanzessen > clonal_sequences_in_paired_samples

comparison ALL.xml @ 29:5ab17bdf2530 draft

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author davidvanzessen
date Fri, 22 May 2015 09:06:04 -0400
parents eb5b569b44dd
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28:a63ccc36f5a4 29:5ab17bdf2530
1 <tool id="vct_clonal_sequences" name="Clonal Sequences in paired samples" version="1.0"> 1 <tool id="vct_clonal_sequences" name="Clonal Sequences in paired samples" version="1.0">
2 <description>Comparison of clonal sequences in paired samples</description> 2 <description>Comparison of clonal sequences in paired samples</description>
3 <command interpreter="bash"> 3 <command interpreter="bash">
4 wrapper.sh $in_file $out_file $out_file.files_path $min_freq $min_cells 4 wrapper.sh $in_file $out_file $out_file.files_path $min_freq $min_cells $merge_on
5 </command> 5 </command>
6 <inputs> 6 <inputs>
7 <param name="in_file" format="tabular" type="data" label="Data to Process" /> 7 <param name="in_file" format="tabular" type="data" label="Data to Process" />
8 <param name="min_freq" type="text" label="Minimum Frequency, between 0 and 100 in percentage" value='0'/> 8 <param name="min_freq" type="text" label="Minimum Frequency, between 0 and 100 in percentage" value='0'/>
9 <param name="min_cells" type="text" label="Minimum cell count" value='0'/> 9 <param name="min_cells" type="text" label="Minimum cell count" value='0'/>
10 <param name="merge_on" type="select" label="Merge On">
11 <option value="Clone_Sequence">Clone_Sequence</option>
12 <option value="V_J_CDR3">V+J+CDR3</option>
13 </param>
10 </inputs> 14 </inputs>
11 <outputs> 15 <outputs>
12 <data format="html" name="out_file" /> 16 <data format="html" name="out_file" />
13 </outputs> 17 </outputs>
14 <help> 18 <help>