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1 <tool id="vct_clonal_sequences" name="Clonal Sequences in paired samples" version="1.0">
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2 <description>Comparison of clonal sequences in paired samples</description>
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3 <command interpreter="bash">
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3
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4 wrapper.sh $in_file $out_file $out_file.files_path $min_freq $min_cells
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5 </command>
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6 <inputs>
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3
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7 <param name="in_file" format="tabular" type="data" label="Data to Process" />
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8 <param name="min_freq" type="text" label="Minimum Frequency, between 0 and 100 in percentage" value='0'/>
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9 <param name="min_cells" type="text" label="Minimum cell count" value='0'/>
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10 </inputs>
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11 <outputs>
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12 <data format="html" name="out_file" />
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13 </outputs>
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14 <help>
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15 stuff and words
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16 </help>
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17 </tool>
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