Mercurial > repos > davidvanzessen > change_o
diff create_germlines.sh @ 6:3ddd933dd7a2 draft default tip
Uploaded
| author | davidvanzessen |
|---|---|
| date | Thu, 15 Sep 2016 03:54:33 -0400 |
| parents | 6f57d43a1f4c |
| children |
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--- a/create_germlines.sh Mon Aug 15 10:06:24 2016 -0400 +++ b/create_germlines.sh Thu Sep 15 03:54:33 2016 -0400 @@ -17,6 +17,7 @@ mkdir $PWD/outdir #/home/galaxy/anaconda3/bin/python $dir/CreateGermlines.py -d $PWD/input.tab -r $dir/IMGT_Human_IGH[VDJ].fasta --outdir $PWD/outdir --outname output -g $type $cloned -/data/users/david/anaconda3/bin/python $dir/CreateGermlines.py -d $PWD/input.tab -r $dir/IMGT_Human_IGH[VDJ].fasta --outdir $PWD/outdir --outname output -g $type $cloned +#/data/users/david/anaconda3/bin/python $dir/CreateGermlines.py -d $PWD/input.tab -r $dir/IMGT_Human_IGH[VDJ].fasta --outdir $PWD/outdir --outname output -g $type $cloned +python3 $dir/CreateGermlines.py -d $PWD/input.tab -r $dir/IMGT_Human_IGH[VDJ].fasta --outdir $PWD/outdir --outname output -g $type $cloned mv $PWD/outdir/output_germ-pass.tab $output