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comparison create_germlines.sh @ 6:3ddd933dd7a2 draft default tip

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author davidvanzessen
date Thu, 15 Sep 2016 03:54:33 -0400
parents 6f57d43a1f4c
children
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5:3d97839fda21 6:3ddd933dd7a2
15 fi 15 fi
16 16
17 mkdir $PWD/outdir 17 mkdir $PWD/outdir
18 18
19 #/home/galaxy/anaconda3/bin/python $dir/CreateGermlines.py -d $PWD/input.tab -r $dir/IMGT_Human_IGH[VDJ].fasta --outdir $PWD/outdir --outname output -g $type $cloned 19 #/home/galaxy/anaconda3/bin/python $dir/CreateGermlines.py -d $PWD/input.tab -r $dir/IMGT_Human_IGH[VDJ].fasta --outdir $PWD/outdir --outname output -g $type $cloned
20 /data/users/david/anaconda3/bin/python $dir/CreateGermlines.py -d $PWD/input.tab -r $dir/IMGT_Human_IGH[VDJ].fasta --outdir $PWD/outdir --outname output -g $type $cloned 20 #/data/users/david/anaconda3/bin/python $dir/CreateGermlines.py -d $PWD/input.tab -r $dir/IMGT_Human_IGH[VDJ].fasta --outdir $PWD/outdir --outname output -g $type $cloned
21 python3 $dir/CreateGermlines.py -d $PWD/input.tab -r $dir/IMGT_Human_IGH[VDJ].fasta --outdir $PWD/outdir --outname output -g $type $cloned
21 22
22 mv $PWD/outdir/output_germ-pass.tab $output 23 mv $PWD/outdir/output_germ-pass.tab $output