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diff create_germlines.sh @ 2:6f57d43a1f4c draft

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author davidvanzessen
date Thu, 11 Aug 2016 07:40:36 -0400
parents 326165da9ece
children 3ddd933dd7a2
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--- a/create_germlines.sh	Thu Aug 04 08:59:47 2016 -0400
+++ b/create_germlines.sh	Thu Aug 11 07:40:36 2016 -0400
@@ -16,7 +16,7 @@
 
 mkdir $PWD/outdir
 
-/home/galaxy/anaconda3/bin/python $dir/CreateGermlines.py -d $PWD/input.tab -r $dir/IMGT_Human_IGH[VDJ].fasta --outdir $PWD/outdir --outname output -g $type $cloned
-#/data/users/david/anaconda3/bin/python $dir/CreateGermlines.py -d $PWD/input.tab -r $dir/IMGT_Human_IGH[VDJ].fasta --outdir $PWD/outdir --outname output -g $type $cloned
+#/home/galaxy/anaconda3/bin/python $dir/CreateGermlines.py -d $PWD/input.tab -r $dir/IMGT_Human_IGH[VDJ].fasta --outdir $PWD/outdir --outname output -g $type $cloned
+/data/users/david/anaconda3/bin/python $dir/CreateGermlines.py -d $PWD/input.tab -r $dir/IMGT_Human_IGH[VDJ].fasta --outdir $PWD/outdir --outname output -g $type $cloned
 
 mv $PWD/outdir/output_germ-pass.tab $output