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comparison create_germlines.sh @ 2:6f57d43a1f4c draft

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Uploaded
author davidvanzessen
date Thu, 11 Aug 2016 07:40:36 -0400
parents 326165da9ece
children 3ddd933dd7a2
comparison
equal deleted inserted replaced
1:326165da9ece 2:6f57d43a1f4c
14 cloned="" 14 cloned=""
15 fi 15 fi
16 16
17 mkdir $PWD/outdir 17 mkdir $PWD/outdir
18 18
19 /home/galaxy/anaconda3/bin/python $dir/CreateGermlines.py -d $PWD/input.tab -r $dir/IMGT_Human_IGH[VDJ].fasta --outdir $PWD/outdir --outname output -g $type $cloned 19 #/home/galaxy/anaconda3/bin/python $dir/CreateGermlines.py -d $PWD/input.tab -r $dir/IMGT_Human_IGH[VDJ].fasta --outdir $PWD/outdir --outname output -g $type $cloned
20 #/data/users/david/anaconda3/bin/python $dir/CreateGermlines.py -d $PWD/input.tab -r $dir/IMGT_Human_IGH[VDJ].fasta --outdir $PWD/outdir --outname output -g $type $cloned 20 /data/users/david/anaconda3/bin/python $dir/CreateGermlines.py -d $PWD/input.tab -r $dir/IMGT_Human_IGH[VDJ].fasta --outdir $PWD/outdir --outname output -g $type $cloned
21 21
22 mv $PWD/outdir/output_germ-pass.tab $output 22 mv $PWD/outdir/output_germ-pass.tab $output