Mercurial > repos > davidvanzessen > baseline_bayesian_estimation

comparison baseline.xml @ 3:38c038c17d0c draft

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author davidvanzessen
date Wed, 13 Aug 2014 09:07:54 -0400
parents 94fada165724
children 1726dc8f3e0a
comparison
equal deleted inserted replaced
2:94fada165724 3:38c038c17d0c
9 " 9 "
10 #for $i, $input in enumerate($inputs) 10 #for $i, $input in enumerate($inputs)
11 ${input.id} 11 ${input.id}
12 #end for 12 #end for
13 " 13 "
14 $reference $out_file 14 $reference $out_file "$selection"
15 </command> 15 </command>
16 <inputs> 16 <inputs>
17 <repeat name="inputs" title="inputs" min="1" default="1"> 17 <repeat name="inputs" title="inputs" min="1" default="1">
18 <param name="in_file" type="data" label="Input excel or IMGT zip file" /> 18 <param name="in_file" type="data" label="Input excel or IMGT zip file" />
19 <param name="id" type="text" label="ID (alpha-numeric, no spaces)" /> 19 <param name="id" type="text" label="ID (alpha-numeric, no spaces)" />
48 </param> 48 </param>
49 <param name="boundaries" type="select" label="FWR/CDR3 Boundaries"> 49 <param name="boundaries" type="select" label="FWR/CDR3 Boundaries">
50 <option value="1:26:38:55:65:104:-">IMGT® No CDR3</option> 50 <option value="1:26:38:55:65:104:-">IMGT® No CDR3</option>
51 <option value="1:26:38:55:65:104:116">IMGT®</option> 51 <option value="1:26:38:55:65:104:116">IMGT®</option>
52 </param> 52 </param>
53 <param name="selection" type="select" label="Unique Selection Definition">
54 <option value="VGene,AA.JUNCTION">VGene, AA CDR3</option>
55 <option value="VGene,JGene,AA.JUNCTION">VGene, JGene, AA CDR3</option>
56 <option value="VGene,DGene,JGene,CDR3.Seq">VGene, DGene, JGene, AA CDR3</option>
57 <option value="Sequence.ID">None</option>
58 </param>
53 </inputs> 59 </inputs>
54 <outputs> 60 <outputs>
55 <data format="pdf" name="out_file" label = "Baseline on ${on_string}"/> 61 <data format="pdf" name="out_file" label = "Baseline on ${on_string}"/>
56 </outputs> 62 </outputs>
57 <help> 63 <help>