<tool id="baseline_bayesian_comparison" name="Baseline comparison" version="1.0">
	<description>Create baseline comparison plots</description>
	<command interpreter="bash">
		wrapper.sh $in_file $out_file "$rows"
	</command>
	<inputs>
		<param name="in_file" type="data" label="RData file to use" />
		<param name="rows" type="text" size="50" label="row numbers to compare, seperate by space" />
	</inputs>
	<outputs>
		<data format="pdf" name="out_file" label = "Baseline comparison on ${on_string}"/>
	</outputs>
	<help>
			Gur Yaari; Mohamed Uduman; Steven H. Kleinstein. Quantifying selection in high-throughput Immunoglobulin sequencing data sets. Nucleic Acids Res. 2012 May 27.

			Mohamed Uduman; Gur Yaari; Uri Hershberg; Mark J. Shlomchik; Steven H. Kleinstein. Detecting selection in immunoglobulin sequences. Nucleic Acids Res. 2011 Jul;39(Web Server issue):W499-504.
	</help>
</tool>