Mercurial > repos > davidvanzessen > baseline_bayesian_comparison

diff baseline_comparison.xml @ 0:187f2699aacb draft default tip

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author davidvanzessen
date Tue, 15 Jul 2014 08:47:16 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/baseline_comparison.xml	Tue Jul 15 08:47:16 2014 -0400
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+<tool id="baseline_bayesian_comparison" name="Baseline comparison" version="1.0">
+	<description>Create baseline comparison plots</description>
+	<command interpreter="bash">
+		wrapper.sh $in_file $out_file "$rows"
+	</command>
+	<inputs>
+		<param name="in_file" type="data" label="RData file to use" />
+		<param name="rows" type="text" size="50" label="row numbers to compare, seperate by space" />
+	</inputs>
+	<outputs>
+		<data format="pdf" name="out_file" label = "Baseline comparison on ${on_string}"/>
+	</outputs>
+	<help>
+			Gur Yaari; Mohamed Uduman; Steven H. Kleinstein. Quantifying selection in high-throughput Immunoglobulin sequencing data sets. Nucleic Acids Res. 2012 May 27.
+
+			Mohamed Uduman; Gur Yaari; Uri Hershberg; Mark J. Shlomchik; Steven H. Kleinstein. Detecting selection in immunoglobulin sequences. Nucleic Acids Res. 2011 Jul;39(Web Server issue):W499-504.
+	</help>
+</tool>