Mercurial > repos > davidvanzessen > argalaxy_tools

diff experimental_design.xml @ 36:fd55088e48d2 draft

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Uploaded
author davidvanzessen
date Fri, 22 Jan 2016 10:22:24 -0500
parents 672d5e010b1f
children
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--- a/experimental_design.xml	Fri Jan 22 08:45:29 2016 -0500
+++ b/experimental_design.xml	Fri Jan 22 10:22:24 2016 -0500
@@ -1,14 +1,14 @@
 <tool id="experimentaldesign_igg" name="ExperimentalDesign" version="1.0">
 	<description> </description>
-	<command interpreter="python">
-		experimental_design/experimental_design.py 
+	<command interpreter="bash">
+		experimental_design/experimental_design.sh 
 		#for $i, $f in enumerate($patients)
             "$f.id"
             #for $j, $g in enumerate($f.samples)
             	${g.sample}
             #end for
 		#end for
-		--output $out_file
+		$out_file
 	</command>
 	<inputs>
 		<repeat name="patients" title="Patient" min="1" default="1">