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comparison experimental_design.xml @ 36:fd55088e48d2 draft

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author davidvanzessen
date Fri, 22 Jan 2016 10:22:24 -0500
parents 672d5e010b1f
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35:d7580295e13b 36:fd55088e48d2
1 <tool id="experimentaldesign_igg" name="ExperimentalDesign" version="1.0"> 1 <tool id="experimentaldesign_igg" name="ExperimentalDesign" version="1.0">
2 <description> </description> 2 <description> </description>
3 <command interpreter="python"> 3 <command interpreter="bash">
4 experimental_design/experimental_design.py 4 experimental_design/experimental_design.sh
5 #for $i, $f in enumerate($patients) 5 #for $i, $f in enumerate($patients)
6 "$f.id" 6 "$f.id"
7 #for $j, $g in enumerate($f.samples) 7 #for $j, $g in enumerate($f.samples)
8 ${g.sample} 8 ${g.sample}
9 #end for 9 #end for
10 #end for 10 #end for
11 --output $out_file 11 $out_file
12 </command> 12 </command>
13 <inputs> 13 <inputs>
14 <repeat name="patients" title="Patient" min="1" default="1"> 14 <repeat name="patients" title="Patient" min="1" default="1">
15 <repeat name="samples" title="Sample" min="1" default="1"> 15 <repeat name="samples" title="Sample" min="1" default="1">
16 <param name="sample" format="tabular" type="data" label="Sample to Process" /> 16 <param name="sample" format="tabular" type="data" label="Sample to Process" />