Mercurial > repos > davidvanzessen > argalaxy_tools

diff complete.sh @ 51:d3d4823c101a draft

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Uploaded
author davidvanzessen
date Thu, 28 Jan 2016 03:21:26 -0500
parents ee7209928db8
children 5ba0377b7737
line wrap: on
line diff
--- a/complete.sh	Wed Jan 27 10:48:31 2016 -0500
+++ b/complete.sh	Thu Jan 28 03:21:26 2016 -0500
@@ -8,7 +8,7 @@
 locus=$6
 filterproductive=$7
 clonality_method=$8
-
+filter_uniques=$9
 
 html=$2
 dir="$(cd "$(dirname "$0")" && pwd)"
@@ -64,5 +64,5 @@
 
 echo "after ED"
 
-bash $dir/report_clonality/r_wrapper.sh $PWD/merged.txt $2 $outputDir $clonalType "$species" "$locus" $filterproductive $clonality_method
+bash $dir/report_clonality/r_wrapper.sh $PWD/merged.txt $2 $outputDir $clonalType "$species" "$locus" $filterproductive $clonality_method $filter_uniques