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comparison complete.sh @ 51:d3d4823c101a draft

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Uploaded
author davidvanzessen
date Thu, 28 Jan 2016 03:21:26 -0500
parents ee7209928db8
children 5ba0377b7737
comparison
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50:2a79f9adf89b 51:d3d4823c101a
6 clonalType=$4 6 clonalType=$4
7 species=$5 7 species=$5
8 locus=$6 8 locus=$6
9 filterproductive=$7 9 filterproductive=$7
10 clonality_method=$8 10 clonality_method=$8
11 11 filter_uniques=$9
12 12
13 html=$2 13 html=$2
14 dir="$(cd "$(dirname "$0")" && pwd)" 14 dir="$(cd "$(dirname "$0")" && pwd)"
15 array=("$@") 15 array=("$@")
16 echo "<html><h3>Progress</h3><table><tr><td>info</td></tr>" > $html 16 echo "<html><h3>Progress</h3><table><tr><td>info</td></tr>" > $html
62 echo "<tr><td>-----------------------------------</td></tr>" >> $html 62 echo "<tr><td>-----------------------------------</td></tr>" >> $html
63 echo "<tr><td>plotting</td></tr>" >> $html 63 echo "<tr><td>plotting</td></tr>" >> $html
64 64
65 echo "after ED" 65 echo "after ED"
66 66
67 bash $dir/report_clonality/r_wrapper.sh $PWD/merged.txt $2 $outputDir $clonalType "$species" "$locus" $filterproductive $clonality_method 67 bash $dir/report_clonality/r_wrapper.sh $PWD/merged.txt $2 $outputDir $clonalType "$species" "$locus" $filterproductive $clonality_method $filter_uniques
68 68