Mercurial > repos > davidvanzessen > argalaxy_tools

diff complete.sh @ 54:5ba0377b7737 draft

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Uploaded
author davidvanzessen
date Fri, 29 Jan 2016 08:10:21 -0500
parents d3d4823c101a
children
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--- a/complete.sh	Fri Jan 29 05:39:58 2016 -0500
+++ b/complete.sh	Fri Jan 29 08:10:21 2016 -0500
@@ -8,7 +8,6 @@
 locus=$6
 filterproductive=$7
 clonality_method=$8
-filter_uniques=$9
 
 html=$2
 dir="$(cd "$(dirname "$0")" && pwd)"
@@ -64,5 +63,5 @@
 
 echo "after ED"
 
-bash $dir/report_clonality/r_wrapper.sh $PWD/merged.txt $2 $outputDir $clonalType "$species" "$locus" $filterproductive $clonality_method $filter_uniques
+bash $dir/report_clonality/r_wrapper.sh $PWD/merged.txt $2 $outputDir $clonalType "$species" "$locus" $filterproductive $clonality_method