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comparison complete.sh @ 54:5ba0377b7737 draft

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author davidvanzessen
date Fri, 29 Jan 2016 08:10:21 -0500
parents d3d4823c101a
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53:379856bef228 54:5ba0377b7737
6 clonalType=$4 6 clonalType=$4
7 species=$5 7 species=$5
8 locus=$6 8 locus=$6
9 filterproductive=$7 9 filterproductive=$7
10 clonality_method=$8 10 clonality_method=$8
11 filter_uniques=$9
12 11
13 html=$2 12 html=$2
14 dir="$(cd "$(dirname "$0")" && pwd)" 13 dir="$(cd "$(dirname "$0")" && pwd)"
15 array=("$@") 14 array=("$@")
16 echo "<html><h3>Progress</h3><table><tr><td>info</td></tr>" > $html 15 echo "<html><h3>Progress</h3><table><tr><td>info</td></tr>" > $html
62 echo "<tr><td>-----------------------------------</td></tr>" >> $html 61 echo "<tr><td>-----------------------------------</td></tr>" >> $html
63 echo "<tr><td>plotting</td></tr>" >> $html 62 echo "<tr><td>plotting</td></tr>" >> $html
64 63
65 echo "after ED" 64 echo "after ED"
66 65
67 bash $dir/report_clonality/r_wrapper.sh $PWD/merged.txt $2 $outputDir $clonalType "$species" "$locus" $filterproductive $clonality_method $filter_uniques 66 bash $dir/report_clonality/r_wrapper.sh $PWD/merged.txt $2 $outputDir $clonalType "$species" "$locus" $filterproductive $clonality_method
68 67