Mercurial > repos > davidvanzessen > alakazam

view tool_dependencies.xml @ 9:90290b69e8f8 draft

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author davidvanzessen
date Tue, 17 May 2016 05:50:23 -0400
parents db7ff40afce7
children 94712d05ebea
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<?xml version="1.0"?>
<tool_dependency>
    <package name="package_r_3_2_1" version="3.2.1">
      <repository changeset_revision="77d439695328" name="package_r_3_2_1" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
    </package>
    <package name="alakazam" version="0.2.3">
        <install version="1.0">
            <actions>
                <action type="setup_r_environment">
                    <repository changeset_revision="77d439695328" name="package_r_3_2_1" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu">
                        <package name="package_r_3_2_1" version="3.2.1" />
                    </repository>
                    <package>
                        https://cran.ism.ac.jp/src/contrib/dplyr_0.4.3.tar.gz
                    </package>
                    <package>
                        https://cran.ism.ac.jp/src/contrib/seqinr_3.1-3.tar.gz
                    </package>
                    <package>
                        https://cran.ism.ac.jp/src/contrib/lazyeval_0.1.10.tar.gz
                    </package>
                    <package>
                        https://github.com/bgruening/download_store/raw/master/DESeq2-1_8_1/scales_0.3.0.tar.gz
                    </package>
                    <package>
                        https://github.com/bgruening/download_store/raw/master/DESeq2-1_8_1/ggplot2_1.0.1.tar.gz
                    </package>
                    <package>
                        https://github.com/bgruening/download_store/raw/master/monocle/igraph_0.7.1.tar.gz
                    </package>
                    <package>
                        https://bitbucket.org/kleinstein/alakazam/downloads/alakazam_0.2.3.tar.gz
                    </package>
                </action>
            </actions>
        </install>
    </package>
</tool_dependency>