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changeset 5:cbedfe45871d draft

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Uploaded
author crs4
date Thu, 16 Mar 2017 12:26:35 -0400
parents bb79be61ff3e
children a956313b1cae
files exomedepth.xml
diffstat 1 files changed, 3 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/exomedepth.xml	Thu Mar 16 12:22:16 2017 -0400
+++ b/exomedepth.xml	Thu Mar 16 12:26:35 2017 -0400
@@ -1,10 +1,10 @@
-<tool id="exdep" name="ExDep" version="1.0.2">
+<tool id="exdep" name="ExDep" version="1.0.3">
   <description>cnv caller</description>
   <requirements>
      <requirement type="package" version="1.1.10">r-exomedepth</requirement>
   </requirements>
   <command>
-R CMD BATCH --no-save --no-restore '--args mypars="$args_file"' exomedepth.R
+R CMD BATCH --no-save --no-restore '--args mypars="$args_file"' exomedepth.R $log
   </command>
   <inputs>
     <param format="bed" name="targetFile" type="data" label="Target regions (BED)">
@@ -42,6 +42,7 @@
   </configfiles>
   <outputs>
     <data format="bed" name="output" label="${tool.name} on ${on_string}" />
+    <data format="txt" name="log" label="${tool.name} on ${on_string} - log" />
   </outputs>
   <help>