# HG changeset patch
# User crs4
# Date 1489681595 14400
# Node ID cbedfe45871d0b3eb35a5f35657bb93540e4108d
# Parent  bb79be61ff3e0e96abfcf868fefced486784f046
Uploaded

diff -r bb79be61ff3e -r cbedfe45871d exomedepth.xml
--- a/exomedepth.xml	Thu Mar 16 12:22:16 2017 -0400
+++ b/exomedepth.xml	Thu Mar 16 12:26:35 2017 -0400
@@ -1,10 +1,10 @@
-<tool id="exdep" name="ExDep" version="1.0.2">
+<tool id="exdep" name="ExDep" version="1.0.3">
   <description>cnv caller</description>
   <requirements>
      <requirement type="package" version="1.1.10">r-exomedepth</requirement>
   </requirements>
   <command>
-R CMD BATCH --no-save --no-restore '--args mypars="$args_file"' exomedepth.R
+R CMD BATCH --no-save --no-restore '--args mypars="$args_file"' exomedepth.R $log
   </command>
   <inputs>
     <param format="bed" name="targetFile" type="data" label="Target regions (BED)">
@@ -42,6 +42,7 @@
   </configfiles>
   <outputs>
     <data format="bed" name="output" label="${tool.name} on ${on_string}" />
+    <data format="txt" name="log" label="${tool.name} on ${on_string} - log" />
   </outputs>
   <help>