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changeset 16:98120fb71f9b draft

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Uploaded
author crs4
date Fri, 17 Mar 2017 13:01:08 -0400
parents 38832fe9708b
children 6daabb2d16a4
files conifer3/conifer.py
diffstat 1 files changed, 2 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/conifer3/conifer.py	Fri Mar 17 11:47:36 2017 -0400
+++ b/conifer3/conifer.py	Fri Mar 17 13:01:08 2017 -0400
@@ -585,7 +585,8 @@
 
     f = pysam.Samfile(args.input[0], "rb")
 
-    if not f._hasIndex():
+#    if not f._hasIndex():
+    if not f._has_index():
         print("[ERROR] No index found for bam file (%s)!\n[ERROR] You must first index the bam file and include the .bai file in the same directory as the bam file!" % \
               args.input[0])
         sys.exit(0)