Mercurial > repos > climate > psy_maps

annotate psymap_simple.py @ 0:eb1f3666ce17 draft

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planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
author climate
date Thu, 25 Apr 2019 18:10:40 -0400
parents
children 322e000d8c48
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0
eb1f3666ce17 planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
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1 #!/usr/bin/env python3
eb1f3666ce17 planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
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2 #
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3 #
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4 # usage: psymap_simple.py [-h] [--proj PROJ]
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5 # [--cmap CMAP]
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6 # [--output OUTPUT]
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7 # [-v]
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8 # input varname
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9 #
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10 # positional arguments:
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11 # input input filename with geographical coordinates (netCDF
eb1f3666ce17 planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
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12 # format)
eb1f3666ce17 planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
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13 # varname Specify which variable to plot (case sensitive)
eb1f3666ce17 planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
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14 #
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15 # optional arguments:
eb1f3666ce17 planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
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16 # -h, --help show this help message and exit
eb1f3666ce17 planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
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17 # --proj PROJ Specify the projection on which we draw
eb1f3666ce17 planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
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18 # --cmap CMAP Specify which colormap to use for plotting
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19 # --output OUTPUT output filename to store resulting image (png format)
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20 # -v, --verbose switch on verbose mode
eb1f3666ce17 planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
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21 #
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22
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23 import argparse
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24 import warnings
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25 from pathlib import Path
eb1f3666ce17 planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
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26
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27 import matplotlib as mpl
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28 mpl.use('Agg')
eb1f3666ce17 planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
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29 from matplotlib import pyplot # noqa: I202,E402
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31 import psyplot.project as psy # noqa: I202,E402
eb1f3666ce17 planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
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32
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33
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34 class PsyPlot ():
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35 def __init__(self, input, proj, varname, cmap, output,
eb1f3666ce17 planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
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36 verbose=False
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37 ):
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38 self.input = input
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39 self.proj = proj
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40 self.varname = varname
eb1f3666ce17 planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
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41 self.cmap = cmap
eb1f3666ce17 planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
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42 if output is None:
eb1f3666ce17 planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
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43 self.output = Path(input).stem + '.png'
eb1f3666ce17 planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
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44 else:
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45 self.output = output
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46 self.verbose = verbose
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47 if verbose:
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48 print("input: ", self.input)
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49 print("proj: ", self.proj)
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50 print("varname: ", self.varname)
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51 print("cmap: ", self.cmap)
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52 print("output: ", self.output)
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53
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54 def plot(self):
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55 if self.cmap is None and self.proj is None:
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56 print("op1")
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57 psy.plot.mapplot(self.input, name=self.varname,
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58 clabel='{desc}')
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59 elif self.proj is None or self.proj == '':
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60 print("op2")
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61 psy.plot.mapplot(self.input, name=self.varname,
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62 cmap=self.cmap, clabel='{desc}')
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63 elif self.cmap is None or self.cmap == '':
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64 print("op3")
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65 psy.plot.mapplot(self.input, name=self.varname,
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66 projection=self.proj,
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67 clabel='{desc}')
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68 else:
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69 print("op4")
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70 psy.plot.mapplot(self.input, name=self.varname,
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71 cmap=self.cmap,
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72 projection=self.proj,
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73 clabel='{desc}')
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74
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75 pyplot.savefig(self.output)
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76
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77
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78 def psymap_plot(input, proj, varname, cmap, output, verbose):
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79 """Generate plot from input filename"""
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80
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81 p = PsyPlot(input, proj, varname, cmap, output, verbose)
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82 p.plot()
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83
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84
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85 if __name__ == '__main__':
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86 warnings.filterwarnings("ignore")
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87 parser = argparse.ArgumentParser()
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88 parser.add_argument(
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89 'input',
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90 help='input filename with geographical coordinates (netCDF format)'
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91 )
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92
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93 parser.add_argument(
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94 '--proj',
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95 help='Specify the projection on which we draw'
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96 )
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97 parser.add_argument(
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98 'varname',
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99 help='Specify which variable to plot (case sensitive)'
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100 )
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101 parser.add_argument(
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102 '--cmap',
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103 help='Specify which colormap to use for plotting'
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104 )
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105 parser.add_argument(
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106 '--output',
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107 help='output filename to store resulting image (png format)'
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108 )
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109 parser.add_argument(
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110 "-v", "--verbose",
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111 help="switch on verbose mode",
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112 action="store_true")
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113 args = parser.parse_args()
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114
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115 psymap_plot(args.input, args.proj, args.varname, args.cmap,
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116 args.output, args.verbose)