Mercurial > repos > blankenberg > package_pybamtools_0_0_2

annotate tool_dependencies.xml @ 0:b9bb96e4c532 draft

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planemo upload for repository https://github.com/blankenberg/tools-blankenberg/tree/master/packages/package_pybamtools_0_0_2 commit cf5c0f6fb2651adf72e317a1cf77805fca30d84e
author blankenberg
date Thu, 17 Sep 2015 11:18:58 -0400
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b9bb96e4c532 planemo upload for repository https://github.com/blankenberg/tools-blankenberg/tree/master/packages/package_pybamtools_0_0_2 commit cf5c0f6fb2651adf72e317a1cf77805fca30d84e
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1 <?xml version="1.0"?>
b9bb96e4c532 planemo upload for repository https://github.com/blankenberg/tools-blankenberg/tree/master/packages/package_pybamtools_0_0_2 commit cf5c0f6fb2651adf72e317a1cf77805fca30d84e
blankenberg
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2 <tool_dependency>
b9bb96e4c532 planemo upload for repository https://github.com/blankenberg/tools-blankenberg/tree/master/packages/package_pybamtools_0_0_2 commit cf5c0f6fb2651adf72e317a1cf77805fca30d84e
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3 <package name="pyBamTools" version="0.0.2">
b9bb96e4c532 planemo upload for repository https://github.com/blankenberg/tools-blankenberg/tree/master/packages/package_pybamtools_0_0_2 commit cf5c0f6fb2651adf72e317a1cf77805fca30d84e
blankenberg
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4 <install version="1.0">
b9bb96e4c532 planemo upload for repository https://github.com/blankenberg/tools-blankenberg/tree/master/packages/package_pybamtools_0_0_2 commit cf5c0f6fb2651adf72e317a1cf77805fca30d84e
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5 <actions>
b9bb96e4c532 planemo upload for repository https://github.com/blankenberg/tools-blankenberg/tree/master/packages/package_pybamtools_0_0_2 commit cf5c0f6fb2651adf72e317a1cf77805fca30d84e
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6 <action type="shell_command">hg clone -r ba0341816b15fff5e0a554658d6579a60e1b12b1 https://bitbucket.org/dan/pybamtools pyBamTools</action>
b9bb96e4c532 planemo upload for repository https://github.com/blankenberg/tools-blankenberg/tree/master/packages/package_pybamtools_0_0_2 commit cf5c0f6fb2651adf72e317a1cf77805fca30d84e
blankenberg
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7 <action type="make_directory">$INSTALL_DIR/lib/python</action>
b9bb96e4c532 planemo upload for repository https://github.com/blankenberg/tools-blankenberg/tree/master/packages/package_pybamtools_0_0_2 commit cf5c0f6fb2651adf72e317a1cf77805fca30d84e
blankenberg
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8 <action type="shell_command">export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp; python setup.py install --home $INSTALL_DIR</action>
b9bb96e4c532 planemo upload for repository https://github.com/blankenberg/tools-blankenberg/tree/master/packages/package_pybamtools_0_0_2 commit cf5c0f6fb2651adf72e317a1cf77805fca30d84e
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9 <action type="set_environment">
b9bb96e4c532 planemo upload for repository https://github.com/blankenberg/tools-blankenberg/tree/master/packages/package_pybamtools_0_0_2 commit cf5c0f6fb2651adf72e317a1cf77805fca30d84e
blankenberg
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10 <environment_variable name="PYTHONPATH" action="prepend_to">$INSTALL_DIR/lib/python</environment_variable>
b9bb96e4c532 planemo upload for repository https://github.com/blankenberg/tools-blankenberg/tree/master/packages/package_pybamtools_0_0_2 commit cf5c0f6fb2651adf72e317a1cf77805fca30d84e
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11 </action>
b9bb96e4c532 planemo upload for repository https://github.com/blankenberg/tools-blankenberg/tree/master/packages/package_pybamtools_0_0_2 commit cf5c0f6fb2651adf72e317a1cf77805fca30d84e
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12 </actions>
b9bb96e4c532 planemo upload for repository https://github.com/blankenberg/tools-blankenberg/tree/master/packages/package_pybamtools_0_0_2 commit cf5c0f6fb2651adf72e317a1cf77805fca30d84e
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13 </install>
b9bb96e4c532 planemo upload for repository https://github.com/blankenberg/tools-blankenberg/tree/master/packages/package_pybamtools_0_0_2 commit cf5c0f6fb2651adf72e317a1cf77805fca30d84e
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14 <readme>
b9bb96e4c532 planemo upload for repository https://github.com/blankenberg/tools-blankenberg/tree/master/packages/package_pybamtools_0_0_2 commit cf5c0f6fb2651adf72e317a1cf77805fca30d84e
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15 Installs pyBamTools libraries.
b9bb96e4c532 planemo upload for repository https://github.com/blankenberg/tools-blankenberg/tree/master/packages/package_pybamtools_0_0_2 commit cf5c0f6fb2651adf72e317a1cf77805fca30d84e
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16 </readme>
b9bb96e4c532 planemo upload for repository https://github.com/blankenberg/tools-blankenberg/tree/master/packages/package_pybamtools_0_0_2 commit cf5c0f6fb2651adf72e317a1cf77805fca30d84e
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17 </package>
b9bb96e4c532 planemo upload for repository https://github.com/blankenberg/tools-blankenberg/tree/master/packages/package_pybamtools_0_0_2 commit cf5c0f6fb2651adf72e317a1cf77805fca30d84e
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18 </tool_dependency>