Mercurial > repos > bgruening > upload_testing

comparison bamCoverage.xml @ 51:6a2a7374450b

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author bgruening
date Fri, 02 Aug 2013 13:53:20 -0400
parents c6f1a059bc7d
children 411c871f4cfd
comparison
equal deleted inserted replaced
50:f9390e176b8f 51:6a2a7374450b
1 <tool id="bamCoverage" name="bamCoverage" version="1.0"> 1 <tool id="bamCoverage" name="bamCoverage" version="1.0">
2 <description>Given a BAM file, generates a coverage bigwig file. Multiple options available to count reads and normalize coverage.</description> 2 <description>Given a BAM file, generates a coverage bigwig file. Multiple options available to count reads and normalize coverage.</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="1.5.1_98e5d8a61431ea8605c0643d991a1a5d8999b4dc">deepTools</requirement>
4 <requirement type="package" version="1.7.1">numpy</requirement> 5 <requirement type="package" version="1.7.1">numpy</requirement>
5 <requirement type="python-module">argsparse</requirement>
6 <requirement type="python-module">pysam</requirement>
7 <requirement type="python-module">numpy</requirement>
8 </requirements> 6 </requirements>
9 <command>bamCoverage 7 <command>bamCoverage
10 --bam '$bamInput' 8 --bam '$bamInput'
11 --bamIndex ${bamInput.metadata.bam_index} 9 --bamIndex ${bamInput.metadata.bam_index}
12 --outFileName '$outFileName' 10 --outFileName '$outFileName'