#!/usr/bin/bash

set -e

mkdir -p fixed;
for file in ./umiout/*;
do
prefix="${file%.dot.gz}";
prefix="${prefix/.\/umiout\//}";
gunzip "$file";
sed "s/umiout\/$prefix.dot.gz/$prefix/" "umiout/$prefix.dot" > "fixed/$prefix.dot";
dot -Tpdf "fixed/$prefix.dot" -o "fixed/$prefix.pdf";
done
ls fixed