<?xml version="1.0" encoding="UTF-8"?>
  <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.-->
  <!--Proposed Tool Section: [Utilities]-->
  <tool id="SpecLibCreator" name="SpecLibCreator" version="2.0.0">
    <description>Creates an MSP formatted spectral library.</description>
    <macros>
      <token name="@EXECUTABLE@">SpecLibCreator</token>
      <import>macros.xml</import>
    </macros>
    <expand macro="references"/>
    <expand macro="stdio"/>
    <expand macro="requirements"/>
    <command>SpecLibCreator

#if $param_info:
  -info $param_info
#end if
#if $param_itemseperator:
  -itemseperator     &quot;$param_itemseperator&quot;
#end if
#if $param_itemenclosed:
  -itemenclosed
#end if
#if $param_spec:
  -spec $param_spec
#end if
#if $param_out:
  -out $param_out
#end if
-threads \${GALAXY_SLOTS:-24}
#if $adv_opts.adv_opts_selector=='advanced':
    #if $adv_opts.param_force:
  -force
#end if
#end if
</command>
    <inputs>
      <param format="tabular" help="(-info) " label="Holds id, peptide, retention time etc" name="param_info" optional="False" type="data"/>
      <param help="(-itemseperator) " label=" Seperator between items. e.g. ," name="param_itemseperator" size="30" type="text" value=",">
        <sanitizer>
          <valid initial="string.printable">
            <remove value="'"/>
            <remove value="&quot;"/>
          </valid>
        </sanitizer>
      </param>
      <param checked="false" falsevalue="" help="(-itemenclosed) e.g. '$peptide$,$run$" label="'true' or 'false' if true every item is enclosed" name="param_itemenclosed" optional="True" truevalue="-itemenclosed" type="boolean"/>
      <param format="xml,mzxml" help="(-spec) " label="spectra" name="param_spec" optional="False" type="data"/>
      <expand macro="advanced_options">
        <param checked="false" falsevalue="" help="(-force) " label="Overwrite tool specific checks" name="param_force" optional="True" truevalue="-force" type="boolean"/>
      </expand>
    </inputs>
    <outputs>
      <data format="txt" name="param_out"/>
    </outputs>
    <help>Creates an MSP formatted spectral library.


For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/UTILS_SpecLibCreator.html</help>
  </tool>