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author bgruening
date Wed, 27 Jan 2016 10:06:49 -0500
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6ead64a594bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/openms commit 7a5239910fda9ed90cca286a38855703b40b1b56-dirty
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1 <?xml version="1.0" encoding="UTF-8"?>
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2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.-->
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3 <!--Proposed Tool Section: [Utilities]-->
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4 <tool id="LabeledEval" name="LabeledEval" version="2.0.0">
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5 <description> Evaluation tool for isotope-labeled quantitation experiments.</description>
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6 <macros>
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7 <token name="@EXECUTABLE@">LabeledEval</token>
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8 <import>macros.xml</import>
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9 </macros>
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10 <expand macro="references"/>
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11 <expand macro="stdio"/>
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12 <expand macro="requirements"/>
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13 <command>LabeledEval
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14
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15 #if $param_in:
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16 -in $param_in
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17 #end if
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18 #if $param_truth:
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19 -truth $param_truth
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20 #end if
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21 #if $param_rt_tol:
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22 -rt_tol $param_rt_tol
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23 #end if
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24 #if $param_mz_tol:
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25 -mz_tol $param_mz_tol
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26 #end if
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27 -threads \${GALAXY_SLOTS:-24}
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28 #if $adv_opts.adv_opts_selector=='advanced':
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29 #if $adv_opts.param_force:
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30 -force
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31 #end if
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32 #end if
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33 &gt; $param_stdout
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34 </command>
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35 <inputs>
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36 <param format="xml" help="(-in) " label="Feature result file" name="param_in" optional="False" type="data"/>
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37 <param format="consensusxml" help="(-truth) " label="Expected result file" name="param_truth" optional="False" type="data"/>
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38 <param help="(-rt_tol) " label="Maximum allowed retention time deviation" name="param_rt_tol" type="float" value="20.0"/>
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39 <param help="(-mz_tol) " label="Maximum allowed m/z deviation (divided by charge)" name="param_mz_tol" type="float" value="0.25"/>
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40 <expand macro="advanced_options">
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41 <param checked="false" falsevalue="" help="(-force) " label="Overwrite tool specific checks" name="param_force" optional="True" truevalue="-force" type="boolean"/>
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42 </expand>
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43 </inputs>
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44 <outputs>
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45 <data format="text" label="Output from stdout" name="param_stdout"/>
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46 </outputs>
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47 <help> Evaluation tool for isotope-labeled quantitation experiments.
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48
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49
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50 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/UTILS_LabeledEval.html</help>
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51 </tool>