diff LabeledEval.xml @ 0:3d84209d3178 draft

Uploaded
author bgruening
date Fri, 10 Oct 2014 18:20:03 -0400
parents
children 6ead64a594bd
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/LabeledEval.xml	Fri Oct 10 18:20:03 2014 -0400
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+<?xml version='1.0' encoding='UTF-8'?>
+<tool id="LabeledEval" name="LabeledEval" version="1.12.0">
+  <description> Evaluation tool for isotope-labeled quantitation experiments.</description>
+  <macros>
+    <token name="@EXECUTABLE@">LabeledEval</token>
+    <import>macros.xml</import>
+  </macros>
+  <expand macro="stdio"/>
+  <expand macro="requirements"/>
+  <command>LabeledEval
+
+-in ${param_in}
+-truth ${param_truth}
+-rt_tol ${param_rt_tol}
+-mz_tol ${param_mz_tol}
+-threads \${GALAXY_SLOTS:-24} 
+</command>
+  <inputs>
+    <param name="param_in" type="data" format="featureXML" optional="False" label="Feature result file" help="(-in)"/>
+    <param name="param_truth" type="data" format="consensusXML" optional="False" label="Expected result file." help="(-truth)"/>
+    <param name="param_rt_tol" type="float" value="20.0" label="Maximum allowed retention time deviation" help="(-rt_tol)"/>
+    <param name="param_mz_tol" type="float" value="0.25" label="Maximum allowed m/z deviation (divided by charge)" help="(-mz_tol)"/>
+  </inputs>
+  <outputs/>
+  <help>**What it does**
+
+ Evaluation tool for isotope-labeled quantitation experiments.
+
+
+For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/UTILS_LabeledEval.html
+
+@REFERENCES@
+</help>
+</tool>