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annotate FileInfo.xml @ 4:6ead64a594bd draft default tip

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/openms commit 7a5239910fda9ed90cca286a38855703b40b1b56-dirty
author bgruening
date Wed, 27 Jan 2016 10:06:49 -0500
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1 <?xml version="1.0" encoding="UTF-8"?>
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2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.-->
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3 <!--Proposed Tool Section: [File Handling]-->
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4 <tool id="FileInfo" name="FileInfo" version="2.0.0">
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5 <description>Shows basic information about the file, such as data ranges and file type.</description>
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6 <macros>
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7 <token name="@EXECUTABLE@">FileInfo</token>
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8 <import>macros.xml</import>
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9 </macros>
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10 <expand macro="references"/>
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11 <expand macro="stdio"/>
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12 <expand macro="requirements"/>
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13 <command>FileInfo
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14
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15 #if $param_in:
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16 -in $param_in
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17 #end if
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18 #if $param_out:
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19 -out $param_out
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20 #end if
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21 #if $param_out_tsv:
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22 -out_tsv $param_out_tsv
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23 #end if
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24 #if $param_m:
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25 -m
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26 #end if
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27 #if $param_p:
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28 -p
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29 #end if
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30 #if $param_s:
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31 -s
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32 #end if
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33 #if $param_d:
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34 -d
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35 #end if
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36 #if $param_c:
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37 -c
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38 #end if
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39 #if $param_v:
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40 -v
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41 #end if
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42 #if $param_i:
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43 -i
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44 #end if
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45 -threads \${GALAXY_SLOTS:-24}
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46 #if $adv_opts.adv_opts_selector=='advanced':
4
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47 #if $adv_opts.param_force:
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48 -force
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49 #end if
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50 #end if
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51 </command>
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52 <inputs>
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53 <param format="xml,mzml,mzxml,consensusxml,txt,pepxml" help="(-in) " label="input file" name="param_in" optional="False" type="data"/>
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54 <param checked="false" falsevalue="" help="(-m) " label="Show meta information about the whole experiment" name="param_m" optional="True" truevalue="-m" type="boolean"/>
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55 <param checked="false" falsevalue="" help="(-p) " label="Shows data processing information" name="param_p" optional="True" truevalue="-p" type="boolean"/>
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56 <param checked="false" falsevalue="" help="(-s) " label="Computes a five-number statistics of intensities, qualities, and widths" name="param_s" optional="True" truevalue="-s" type="boolean"/>
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57 <param checked="false" falsevalue="" help="(-d) " label="Show detailed listing of all spectra and chromatograms (peak files only)" name="param_d" optional="True" truevalue="-d" type="boolean"/>
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58 <param checked="false" falsevalue="" help="(-c) " label="Check for corrupt data in the file (peak files only)" name="param_c" optional="True" truevalue="-c" type="boolean"/>
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59 <param checked="false" falsevalue="" help="(-v) " label="Validate the file only (for mzML, mzData, mzXML, featureXML, idXML, consensusXML, pepXML)" name="param_v" optional="True" truevalue="-v" type="boolean"/>
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60 <param checked="false" falsevalue="" help="(-i) " label="Check whether a given mzML file contains valid indices (conforming to the indexedmzML standard)" name="param_i" optional="True" truevalue="-i" type="boolean"/>
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61 <expand macro="advanced_options">
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62 <param checked="false" falsevalue="" help="(-force) " label="Overwrite tool specific checks" name="param_force" optional="True" truevalue="-force" type="boolean"/>
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63 </expand>
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64 </inputs>
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65 <outputs>
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66 <data format="txt" name="param_out"/>
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67 <data format="tabular" name="param_out_tsv"/>
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68 </outputs>
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69 <help>Shows basic information about the file, such as data ranges and file type.
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71
4
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72 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_FileInfo.html</help>
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73 </tool>