Mercurial > repos > bgruening > openms
diff FileInfo.xml @ 0:3d84209d3178 draft
Uploaded
| author | bgruening |
|---|---|
| date | Fri, 10 Oct 2014 18:20:03 -0400 |
| parents | |
| children | 6ead64a594bd |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/FileInfo.xml Fri Oct 10 18:20:03 2014 -0400 @@ -0,0 +1,63 @@ +<?xml version='1.0' encoding='UTF-8'?> +<tool id="FileInfo" name="FileInfo" version="1.12.0"> + <description>Shows basic information about the file, such as data ranges and file type.</description> + <macros> + <token name="@EXECUTABLE@">FileInfo</token> + <import>macros.xml</import> + </macros> + <expand macro="stdio"/> + <expand macro="requirements"/> + <command>FileInfo + +-in ${param_in} +-in_type ${param_in_type} +-out ${param_out} +${param_m} +${param_p} +${param_s} +${param_d} +${param_c} +${param_v} +${param_i} +-threads \${GALAXY_SLOTS:-24} +#if $adv_opts.adv_opts_selector=='advanced': + -out_tsv ${adv_opts.param_out_tsv} +#end if +</command> + <inputs> + <param name="param_in" type="data" format="mzXML,mzML,mgf,featureXML,consensusXML,idXML,pepXML" optional="False" label="input file " help="(-in)"/> + <param name="param_in_type" type="select" optional="True" label="input file type -- default: determined from file extension or content" help="(-in_type)"> + <option value="mzData">mzData</option> + <option value="mzXML">mzXML</option> + <option value="mzML">mzML</option> + <option value="dta">dta</option> + <option value="dta2d">dta2d</option> + <option value="mgf">mgf</option> + <option value="featureXML">featureXML</option> + <option value="consensusXML">consensusXML</option> + <option value="idXML">idXML</option> + <option value="pepXML">pepXML</option> + <option value="fid">fid</option> + </param> + <param name="param_m" type="boolean" truevalue="-m true" falsevalue="-m false" checked="false" optional="True" label="Show meta information about the whole experiment" help="(-m)"/> + <param name="param_p" type="boolean" truevalue="-p true" falsevalue="-p false" checked="false" optional="True" label="Shows data processing information" help="(-p)"/> + <param name="param_s" type="boolean" truevalue="-s true" falsevalue="-s false" checked="false" optional="True" label="Computes a five-number statistics of intensities, qualities, and widths" help="(-s)"/> + <param name="param_d" type="boolean" truevalue="-d true" falsevalue="-d false" checked="false" optional="True" label="Show detailed listing of all spectra and chromatograms (peak files only)" help="(-d)"/> + <param name="param_c" type="boolean" truevalue="-c true" falsevalue="-c false" checked="false" optional="True" label="Check for corrupt data in the file (peak files only)" help="(-c)"/> + <param name="param_v" type="boolean" truevalue="-v true" falsevalue="-v false" checked="false" optional="True" label="Validate the file only (for mzML, mzData, mzXML, featureXML, idXML, consensusXML, pepXML)" help="(-v)"/> + <param name="param_i" type="boolean" truevalue="-i true" falsevalue="-i false" checked="false" optional="True" label="Check whether a given mzML file contains valid indices (conforming to the indexedmzML standard)" help="(-i)"/> + </inputs> + <outputs> + <data name="param_out" label="Optional output file. If left out, the output is written to the command line." format="txt"/> + <data name="param_out_tsv" label="Second optional output file. Tab separated flat text file." format="tabular"/> + </outputs> + <help>**What it does** + +Shows basic information about the file, such as data ranges and file type. + + +For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_FileInfo.html + +@REFERENCES@ +</help> +</tool>
