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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit c6c9d43a4ecdc88ebdeaf3451453a550f159c506
author bgruening
date Mon, 21 Jul 2025 15:51:13 +0000
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1 <tool id="json2yolosegment" name="Convert AnyLabeling JSON to YOLO text" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="24.2">
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2 <description>with ultralytics</description>
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3 <macros>
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4 <import>macros.xml</import>
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5 </macros>
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6 <expand macro="creator" />
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7 <expand macro="edam" />
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8 <expand macro="requirements" />
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9 <command detect_errors="aggressive">
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10 <![CDATA[
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11 mkdir ./input ./output &&
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12
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13 #for $filename in $in_json:
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14 #if $filename.element_identifier.endswith($filename.ext)
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15 ln -s '$filename' './input/${filename.element_identifier}' &&
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16 #else:
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17 ln -s '$filename' './input/${filename.element_identifier}.${filename.ext}' &&
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18 #end if
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19 #end for
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21 python '$__tool_directory__/json2yolosegment.py'
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22 -i ./input/
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23 -o ./output
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24 -c '$class_name'
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25
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26 ]]>
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27 </command>
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28 <inputs>
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29 <param name="in_json" type="data" format="json" multiple="true" label="Input label files" help="The label file is the output of AnyLabeling in JSON format."/>
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30 <param name="class_name" type="data" format="txt" label="Class file" help="Class names text file, contains the names of classes, one class per row."/>
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31 </inputs>
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32 <outputs>
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33 <collection name="output_yolo" type="list" label="YOLO text files">
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34 <discover_datasets pattern="(?P&lt;designation&gt;.+)\.txt" directory="./output" format="txt"/>
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35 </collection>
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36 </outputs>
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37 <tests>
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38 <test>
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39 <param name="in_json" value="in_json.json,in_json1.json" />
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40 <param name="class_name" value="class_names.txt" />
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41 <output_collection name="output_yolo">
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42 <element name="in_json">
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43 <assert_contents>
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44 <has_n_lines n="1" />
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45 <has_text text="0.8532289628180039" />
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46 </assert_contents>
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47 </element>
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48 <element name="in_json1">
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49 <assert_contents>
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50 <has_n_lines n="1" />
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51 <has_text text="0.7710371819960861" />
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52 </assert_contents>
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53 </element>
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54 </output_collection>
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55 </test>
1
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56 <test>
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57 <param name="in_json" value="in_json_noext,in_json1_noext" />
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58 <param name="class_name" value="class_names.txt" />
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59 <output_collection name="output_yolo">
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60 <element name="in_json1_noext">
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61 <assert_contents>
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62 <has_n_lines n="1" />
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63 <has_text text="0.7710371819960861" />
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64 </assert_contents>
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65 </element>
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66 <element name="in_json_noext">
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67 <assert_contents>
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68 <has_n_lines n="1" />
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69 <has_text text="0.8532289628180039" />
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70 </assert_contents>
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71 </element>
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72 </output_collection>
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73 </test>
0
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74 </tests>
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75 <help>
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76 <![CDATA[
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77 **What it does**
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78 This tool converts label files generated by AnyLabeling into YOLO supported text files.
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79 ]]>
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80 </help>
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81 <expand macro="citations" />
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82 </tool>