Mercurial > repos > bgruening > dotknot

annotate tool_dependencies.xml @ 1:12fd4ac417fe draft default tip

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna/dotknot commit 1973f3035c10db80883d80847ea254289f5cce2a-dirty
author bgruening
date Thu, 17 Sep 2015 16:51:55 -0400
parents 7d7194e4a205
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7d7194e4a205 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna/dotknot commit 6def0606119579a9adbc09c171b87a2bcac7236d-dirty
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1 <?xml version="1.0"?>
7d7194e4a205 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna/dotknot commit 6def0606119579a9adbc09c171b87a2bcac7236d-dirty
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2 <tool_dependency>
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3 <package name="vienna_rna" version="1.8.5">
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4 <repository changeset_revision="39923a0c80df" name="package_vienna_rna_1_8" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
7d7194e4a205 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna/dotknot commit 6def0606119579a9adbc09c171b87a2bcac7236d-dirty
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5 </package>
7d7194e4a205 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna/dotknot commit 6def0606119579a9adbc09c171b87a2bcac7236d-dirty
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6 <package name="dotknot" version="1.3.1">
7d7194e4a205 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna/dotknot commit 6def0606119579a9adbc09c171b87a2bcac7236d-dirty
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7 <install version="1.0">
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8 <actions>
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9 <action type="download_by_url">https://github.com/bgruening/download_store/raw/master/dotknot/dotknot_1.3.1.tar.bz2</action>
7d7194e4a205 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna/dotknot commit 6def0606119579a9adbc09c171b87a2bcac7236d-dirty
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10 <action type="move_directory_files">
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11 <source_directory>.</source_directory>
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12 <destination_directory>$INSTALL_DIR</destination_directory>
7d7194e4a205 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna/dotknot commit 6def0606119579a9adbc09c171b87a2bcac7236d-dirty
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13 </action>
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14 <action type="set_environment">
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15 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR</environment_variable>
7d7194e4a205 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna/dotknot commit 6def0606119579a9adbc09c171b87a2bcac7236d-dirty
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16 <environment_variable action="set_to" name="DOTKNOT_ROOT_PATH">$INSTALL_DIR</environment_variable>
7d7194e4a205 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna/dotknot commit 6def0606119579a9adbc09c171b87a2bcac7236d-dirty
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17 </action>
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18 </actions>
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19 </install>
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20 <readme>
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21
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22 DotKnot:a heuristic method for pseudoknot prediction in a given RNA sequence.
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23 See http://dotknot.csse.uwa.edu.au/
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24
7d7194e4a205 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna/dotknot commit 6def0606119579a9adbc09c171b87a2bcac7236d-dirty
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25 </readme>
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26 </package>
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27 </tool_dependency>