Mercurial > repos > bgruening > dotknot

diff tool_dependencies.xml @ 0:7d7194e4a205 draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna/dotknot commit 6def0606119579a9adbc09c171b87a2bcac7236d-dirty
author bgruening
date Thu, 17 Sep 2015 12:53:41 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Thu Sep 17 12:53:41 2015 -0400
@@ -0,0 +1,27 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="vienna_rna" version="1.8.5">
+        <repository changeset_revision="39923a0c80df" name="package_vienna_rna_1_8" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="dotknot" version="1.3.1">
+        <install version="1.0">
+            <actions>
+                <action type="download_by_url">https://github.com/bgruening/download_store/raw/master/dotknot/dotknot_1.3.1.tar.bz2</action>
+                <action type="move_directory_files">
+                    <source_directory>.</source_directory>
+                    <destination_directory>$INSTALL_DIR</destination_directory>
+                </action>
+                <action type="set_environment">
+                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR</environment_variable>
+                    <environment_variable action="set_to" name="DOTKNOT_ROOT_PATH">$INSTALL_DIR</environment_variable>
+                </action>
+            </actions>
+        </install>
+            <readme>
+        
+            DotKnot:a heuristic method for pseudoknot prediction in a given RNA sequence.
+            See http://dotknot.csse.uwa.edu.au/
+        
+        </readme>
+    </package>
+</tool_dependency>