Mercurial > repos > bgruening > diffbind

diff tool_dependencies.xml @ 15:aefe2a771a95 draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/diffbind commit 10052765d6b712cf7d38356af4251fcc38a339b6-dirty
author bgruening
date Fri, 26 Feb 2016 13:35:28 -0500
parents 42d23a280d80
children
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--- a/tool_dependencies.xml	Sat Mar 15 05:21:59 2014 -0400
+++ b/tool_dependencies.xml	Fri Feb 26 13:35:28 2016 -0500
@@ -1,19 +1,16 @@
 <?xml version="1.0"?>
 <tool_dependency>
     <package name="R" version="3.0.3">
-        <repository changeset_revision="232ebc8b1c0d" name="package_r_3_0_3" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+        <repository changeset_revision="9a289bea9051" name="package_r_3_0_3" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
     </package>
     <package name="deseq2" version="1.2.10">
-        <repository changeset_revision="2d3eb2823bf7" name="package_deseq2_1_2_10" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+        <repository changeset_revision="e8df6ebba5ff" name="package_deseq2_1_2_10" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
     </package>
-    <set_environment version="1.0">
-        <environment_variable action="set_to" name="DIFFBIND_SCRIPT_PATH">$REPOSITORY_INSTALL_DIR</environment_variable>
-    </set_environment>
     <package name="diffbind" version="1.8.3">
         <install version="1.0">
             <actions>
                 <action type="setup_r_environment">
-                    <repository changeset_revision="232ebc8b1c0d" name="package_r_3_0_3" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu">
+                    <repository changeset_revision="9a289bea9051" name="package_r_3_0_3" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
                         <package name="R" version="3.0.3" />
                     </repository>
                         <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/BiocGenerics_0.8.0.tar.gz</package>