Mercurial > repos > bgruening > data_manager_sylph_database

annotate test-data/sylph_databases.loc.test @ 0:2ea34d422df4 draft default tip

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/data_managers/data_manager_sylph_database commit 6ac2834ca0a21512c9986e2fb8d0dcda1c4b0e18
author bgruening
date Fri, 23 May 2025 09:47:40 +0000
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Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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2ea34d422df4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/data_managers/data_manager_sylph_database commit 6ac2834ca0a21512c9986e2fb8d0dcda1c4b0e18
bgruening
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1 #This is a tab separated file describing the location of StarAMR databases
2ea34d422df4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/data_managers/data_manager_sylph_database commit 6ac2834ca0a21512c9986e2fb8d0dcda1c4b0e18
bgruening
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2 #used for the StarAMR tool
2ea34d422df4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/data_managers/data_manager_sylph_database commit 6ac2834ca0a21512c9986e2fb8d0dcda1c4b0e18
bgruening
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3 #
2ea34d422df4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/data_managers/data_manager_sylph_database commit 6ac2834ca0a21512c9986e2fb8d0dcda1c4b0e18
bgruening
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4 #file has this format (white space characters are TAB characters)
2ea34d422df4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/data_managers/data_manager_sylph_database commit 6ac2834ca0a21512c9986e2fb8d0dcda1c4b0e18
bgruening
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5 #
2ea34d422df4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/data_managers/data_manager_sylph_database commit 6ac2834ca0a21512c9986e2fb8d0dcda1c4b0e18
bgruening
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6 #The columns are:
2ea34d422df4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/data_managers/data_manager_sylph_database commit 6ac2834ca0a21512c9986e2fb8d0dcda1c4b0e18
bgruening
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7 #value name path version
2ea34d422df4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/data_managers/data_manager_sylph_database commit 6ac2834ca0a21512c9986e2fb8d0dcda1c4b0e18
bgruening
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8 #
2ea34d422df4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/data_managers/data_manager_sylph_database commit 6ac2834ca0a21512c9986e2fb8d0dcda1c4b0e18
bgruening
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9 #For example
2ea34d422df4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/data_managers/data_manager_sylph_database commit 6ac2834ca0a21512c9986e2fb8d0dcda1c4b0e18
bgruening
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10 #staramr_downloaded_20241004_resfinder_d1e607b_pointfinder_694919f_plasmidfinder_3e77502 ResFinder: tag 4.6.0, commit d1e607b, 2024-08-06 - PointFinder: tag 4.1.1, commit 694919f, 2024-08-08 - PlasmidFinder: commit 3e77502, 2024-03-07 (downloaded 20241004) /path/to/data
2ea34d422df4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/data_managers/data_manager_sylph_database commit 6ac2834ca0a21512c9986e2fb8d0dcda1c4b0e18
bgruening
parents:
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11 sylph_downloaded_22052025_fungi-refseq-2024-07-25-c200-v0.3.syldb sylph database fungi-refseq-2024-07-25-c200-v0.3.syldb /tmp/tmpwo1n9334/galaxy-dev/tool-data/sylph/fungi-refseq-2024-07-25-c200-v0.3.syldb eukaryote FungiRefSeq-2024-07-25 1
2ea34d422df4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/data_managers/data_manager_sylph_database commit 6ac2834ca0a21512c9986e2fb8d0dcda1c4b0e18
bgruening
parents:
diff changeset
12 sylph_downloaded_22052025_OceanDNA-c200-v0.3.syldb sylph database OceanDNA-c200-v0.3.syldb /tmp/tmpwo1n9334/galaxy-dev/tool-data/sylph/OceanDNA-c200-v0.3.syldb prokaryote OceanDNA 1