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annotate test-data/all_fasta.loc.test @ 1:c46da2ded2ae draft default tip

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/cpat commit a447bd0404d45c185c4410dc9620e970d6995925
author bgruening
date Tue, 23 Jul 2024 15:08:58 +0000
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c46da2ded2ae planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/cpat commit a447bd0404d45c185c4410dc9620e970d6995925
bgruening
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1 #This file lists the locations and dbkeys of all the fasta files
c46da2ded2ae planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/cpat commit a447bd0404d45c185c4410dc9620e970d6995925
bgruening
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2 #under the "genome" directory (a directory that contains a directory
c46da2ded2ae planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/cpat commit a447bd0404d45c185c4410dc9620e970d6995925
bgruening
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3 #for each build). The script extract_fasta.py will generate the file
c46da2ded2ae planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/cpat commit a447bd0404d45c185c4410dc9620e970d6995925
bgruening
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4 #all_fasta.loc. This file has the format (white space characters are
c46da2ded2ae planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/cpat commit a447bd0404d45c185c4410dc9620e970d6995925
bgruening
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5 #TAB characters):
c46da2ded2ae planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/cpat commit a447bd0404d45c185c4410dc9620e970d6995925
bgruening
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6 #
c46da2ded2ae planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/cpat commit a447bd0404d45c185c4410dc9620e970d6995925
bgruening
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7 #<unique_build_id> <display_name> <file_path>
c46da2ded2ae planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/cpat commit a447bd0404d45c185c4410dc9620e970d6995925
bgruening
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8 #
c46da2ded2ae planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/cpat commit a447bd0404d45c185c4410dc9620e970d6995925
bgruening
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9 #So, all_fasta.loc could look something like this:
c46da2ded2ae planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/cpat commit a447bd0404d45c185c4410dc9620e970d6995925
bgruening
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10 test1 "Test Genome" ${__HERE__}/test1.fasta.gz