bg_statistical_hypothesis_testing: statistical_hypothesis

annotate statistical_hypothesis_testing.xml @ 0:a3d8cadaf060 draft default tip

planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656

author	bgruening
date	Mon, 21 Nov 2022 18:07:45 +0000
parents
children

rev	line source
0 a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1 <tool id="bg_statistical_hypothesis_testing" name="Statistical hypothesis testing" version="0.3">
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2 <description>computes several descriptive statistics</description>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	3 <macros>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	4 <import>macros.xml</import>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	5 </macros>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	6 <expand macro="requirements" />
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	7 <command detect_errors="exit_code"><![CDATA[
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	8 python '$__tool_directory__/statistical_hypothesis_testing.py'
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	9 --infile '${infile}'
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	10 --outfile '${outfile}'
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	11 --test_id '${test_methods.test_methods_opts}'
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	12 #if str($test_methods.test_methods_opts) == "describe" or str($test_methods.test_methods_opts) == "mode" or str($test_methods.test_methods_opts) == "normaltest" or str($test_methods.test_methods_opts) == "kurtosistest" or str($test_methods.test_methods_opts) == "skewtest" or str($test_methods.test_methods_opts) == "nanmean" or str($test_methods.test_methods_opts) == "nanmedian" or str($test_methods.test_methods_opts) == "variation" or str($test_methods.test_methods_opts) == "itemfreq" or str($test_methods.test_methods_opts) == "kurtosistest" or str($test_methods.test_methods_opts) == "skewtest" or str($test_methods.test_methods_opts) == "nanmean" or str($test_methods.test_methods_opts) == "nanmedian" or str($test_methods.test_methods_opts) == "variation" or str($test_methods.test_methods_opts) == "tiecorrect":
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	13 --sample_one_cols '${test_methods.sample_one_cols}'
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	14 #elif str($test_methods.test_methods_opts) == "gmean" or str($test_methods.test_methods_opts) == "hmean":
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	15 --sample_one_cols '${test_methods.sample_one_cols}'
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	16 --dtype "${test_methods.dtype}"
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	17 #elif str($test_methods.test_methods_opts) == "anderson":
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	18 --sample_one_cols "${test_methods.sample_one_cols}"
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	19 --dist "${test_methods.dist}"
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	20 #elif str($test_methods.test_methods_opts) == "binom_test":
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	21 --sample_one_cols "${test_methods.sample_one_cols}"
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	22 --n "${test_methods.n}"
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	23 --p "${test_methods.p}"
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	24 #elif str($test_methods.test_methods_opts) == "kurtosis":
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	25 --sample_one_cols "${test_methods.sample_one_cols}"
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	26 --axis "${test_methods.axis}"
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	27 $test_methods.fisher
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	28 $test_methods.bias
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	29 #elif str($test_methods.test_methods_opts) == "moment":
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	30 --sample_one_cols "${test_methods.sample_one_cols}"
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	31 --n "${test_methods.n}"
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	32 #elif str($test_methods.test_methods_opts) == "bayes_mvs":
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	33 --sample_one_cols "${test_methods.sample_one_cols}"
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	34 --alpha "${test_methods.alpha}"
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	35 #elif str($test_methods.test_methods_opts) == "percentileofscore":
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	36 --sample_one_cols "${test_methods.sample_one_cols}"
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	37 --score "${test_methods.score}"
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	38 --kind "${test_methods.kind}"
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	39 #elif str($test_methods.test_methods_opts) == "sigmaclip":
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	40 --sample_one_cols "${test_methods.sample_one_cols}"
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	41 --n "${test_methods.n}"
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	42 --m "${test_methods.m}"
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	43 #elif str($test_methods.test_methods_opts) == "chi2_contingency":
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	44 --sample_one_cols "${test_methods.sample_one_cols}"
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	45 $test_methods.correction
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	46 #if str($test_methods.lambda_).strip():
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	47 --lambda_ "${test_methods.lambda_}"
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	48 #end if
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	49 #elif str($test_methods.test_methods_opts) == "skew" or str($test_methods.test_methods_opts) == "nanstd" :
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	50 --sample_one_cols "${test_methods.sample_one_cols}"
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	51 $test_methods.bias
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	52 #elif str($test_methods.test_methods_opts) == "rankdata":
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	53 --sample_one_cols "${test_methods.sample_one_cols}"
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	54 --md "${test_methods.md}"
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	55 #elif str($test_methods.test_methods_opts) == "sem" or str($test_methods.test_methods_opts) == "zscore" or str($test_methods.test_methods_opts) == "signaltonoise":
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	56 --sample_one_cols "${test_methods.sample_one_cols}"
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	57 #if str($test_methods.ddof).strip():
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	58 --ddof "${test_methods.ddof}"
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	59 #end if
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	60 #elif str($test_methods.test_methods_opts) == "trimboth":
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	61 --sample_one_cols "${test_methods.sample_one_cols}"
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	62 #if str($test_methods.proportiontocut).strip():
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	63 --proportiontocut "${test_methods.proportiontocut}"
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	64 #end if
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	65 #elif str($test_methods.test_methods_opts) == "trim1":
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	66 --sample_one_cols "${test_methods.sample_one_cols}"
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	67 #if str($test_methods.proportiontocut).strip():
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	68 --proportiontocut "${test_methods.proportiontocut}"
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	69 #end if
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	70 --tail "${test_methods.tail}"
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	71 #elif str($test_methods.test_methods_opts) == "boxcox":
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	72 --sample_one_cols "${test_methods.sample_one_cols}"
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	73 --alpha "${test_methods.alpha}"
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	74 #if str($test_methods.imbda).strip():
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	75 --imbda "${test_methods.imbda}"
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	76 #end if
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	77 #elif str($test_methods.test_methods_opts) == "boxcox_llf":
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	78 --sample_one_cols "${test_methods.sample_one_cols}"
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	79 --imbda "${test_methods.imbda}"
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	80 #elif str($test_methods.test_methods_opts) == "kstest":
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	81 --sample_one_cols "${test_methods.sample_one_cols}"
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	82 #if str($test_methods.ni).strip():
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	83 --ni "${test_methods.ni}"
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	84 #end if
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	85 --cdf '${test_methods.cdf}'
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	86 --alternative '${test_methods.alternative}'
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	87 --mode '${test_methods.mode}'
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	88
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	89 #elif str($test_methods.test_methods_opts) == "boxcox_normmax":
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	90 --sample_one_cols '${test_methods.sample_one_cols}'
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	91 #if str($test_methods.mf).strip():
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	92 --mf '${test_methods.mf}'
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	93 #end if
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	94 #if str($test_methods.nf).strip():
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	95 --nf '${test_methods.nf}'
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	96 #end if
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	97 --method '${test_methods.method}'
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	98 #elif str($test_methods.test_methods_opts) == "tmean" or str($test_methods.test_methods_opts) == "tvar" or str($test_methods.test_methods_opts) == "tstd" or str($test_methods.test_methods_opts) == "tsem":
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	99 --sample_one_cols "${test_methods.sample_one_cols}"
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	100 #if str($test_methods.mf).strip():
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	101 --mf '${test_methods.mf}'
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	102 #end if
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	103 #if str($test_methods.nf).strip():
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	104 --nf '${test_methods.nf}'
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	105 #end if
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	106 $test_methods.inclusive1
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	107 $test_methods.inclusive2
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	108 #elif str($test_methods.test_methods_opts) == "tmin":
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	109 --sample_one_cols "${test_methods.sample_one_cols}"
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	110 #if str($test_methods.mf).strip():
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	111 --mf "${test_methods.mf}"
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	112 #end if
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	113 $test_methods.inclusive
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	114 #elif str($test_methods.test_methods_opts) == "tmax":
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	115 --sample_one_cols "${test_methods.sample_one_cols}"
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	116 #if str($test_methods.nf).strip():
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	117 --nf "${test_methods.nf}"
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	118 #end if
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	119 $test_methods.inclusive
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	120 #elif str($test_methods.test_methods_opts) == "histogram":
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	121 --sample_one_cols "${test_methods.sample_one_cols}"
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	122 #if str($test_methods.mf).strip():
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	123 --mf "${test_methods.mf}"
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	124 #end if
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	125 #if str($test_methods.nf).strip():
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	126 --nf "${test_methods.nf}"
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	127 #end if
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	128 --b "${test_methods.b}"
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	129 $test_methods.printextras
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	130 #elif str($test_methods.test_methods_opts) == "cumfreq":
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	131 --sample_one_cols "${test_methods.sample_one_cols}"
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	132 #if str($test_methods.mf).strip():
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	133 --mf "${test_methods.mf}"
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	134 #end if
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	135 #if str($test_methods.nf).strip():
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	136 --nf "${test_methods.nf}"
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	137 #end if
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	138 --b "${test_methods.b}"
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	139 #elif str($test_methods.test_methods_opts) == "threshold":
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	140 --sample_one_cols "${test_methods.sample_one_cols}"
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	141 #if str($test_methods.mf).strip():
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	142 --mf "${test_methods.mf}"
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	143 #end if
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	144 #if str($test_methods.nf).strip():
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	145 --nf "${test_methods.nf}"
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	146 #end if
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	147 --new "${test_methods.new}"
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	148 #elif str($test_methods.test_methods_opts) == "relfreq":
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	149 --sample_one_cols "${test_methods.sample_one_cols}"
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	150 #if str($test_methods.mf).strip():
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	151 --mf "${test_methods.mf}"
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	152 #end if
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	153 #if str($test_methods.nf).strip():
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	154 --nf "${test_methods.nf}"
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	155 #end if
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	156 --b "${test_methods.b}"
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	157 #elif str($test_methods.test_methods_opts) == "spearmanr":
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	158 --sample_one_cols "${test_methods.sample_one_cols}"
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	159 #if str($test_methods.sample_two_cols).strip():
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	160 --sample_two_cols "${test_methods.sample_two_cols}"
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	161 #end if
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	162 #elif str($test_methods.test_methods_opts) == "theilslopes":
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	163 --sample_one_cols "${test_methods.sample_one_cols}"
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	164 #if str($test_methods.sample_two_cols).strip():
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	165 --sample_two_cols "${test_methods.sample_two_cols}"
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	166 #end if
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	167 --alpha "${test_methods.alpha}"
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	168 #elif str($test_methods.test_methods_opts) == "chisquare":
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	169 --sample_one_cols "${test_methods.sample_one_cols}"
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	170 #if str($test_methods.sample_two_cols).strip():
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	171 --sample_two_cols "${test_methods.sample_two_cols}"
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	172 #end if
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	173 #if str($test_methods.ddof).strip():
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	174 --ddof "${test_methods.ddof}"
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	175 #end if
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	176 #elif str($test_methods.test_methods_opts) == "power_divergence":
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	177 --sample_one_cols "${test_methods.sample_one_cols}"
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	178 #if str($test_methods.sample_two_cols).strip():
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	179 --sample_two_cols "${test_methods.sample_two_cols}"
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	180 #end if
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	181 #if str($test_methods.ddof).strip():
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	182 --ddof "${test_methods.ddof}"
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	183 #end if
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	184 #if str($test_methods.lambda_).strip():
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	185 --lambda_ "${test_methods.lambda_}"
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	186 #end if
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	187 #elif str($test_methods.test_methods_opts) == "combine_pvalues":
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	188 --sample_one_cols "${test_methods.sample_one_cols}"
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	189 #if str($test_methods.sample_two_cols).strip() and $test_methods.sample_two_cols:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	190 --sample_two_cols "${test_methods.sample_two_cols}"
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	191 #end if
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	192 --med "${test_methods.med}"
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	193 #elif str($test_methods.test_methods_opts) == "wilcoxon":
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	194 --sample_one_cols "${test_methods.sample_one_cols}"
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	195 #if str($test_methods.sample_two_cols).strip() and $test_methods.sample_two_cols:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	196 --sample_two_cols "${test_methods.sample_two_cols}"
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	197 #end if
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	198 --zero_method "${test_methods.zero_method}"
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	199 $test_methods.correction
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	200 #elif str($test_methods.test_methods_opts) == "ranksums" or str($test_methods.test_methods_opts) == "ansari" or str($test_methods.test_methods_opts) == "linregress" or str($test_methods.test_methods_opts) == "pearsonr" or str($test_methods.test_methods_opts) == "pointbiserialr" or str($test_methods.test_methods_opts) == "ks_2samp" or str($test_methods.test_methods_opts) == "ttest_1samp" or str($test_methods.test_methods_opts) == "histogram2":
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	201 --sample_one_cols '${test_methods.sample_one_cols}'
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	202 --sample_two_cols '${test_methods.sample_two_cols}'
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	203 #elif str($test_methods.test_methods_opts) == "entropy":
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	204 --sample_one_cols '${test_methods.sample_one_cols}'
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	205 --sample_two_cols v${test_methods.sample_two_cols}'
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	206 --base "${test_methods.base}"
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	207 #elif str($test_methods.test_methods_opts) == "kendalltau":
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	208 --sample_one_cols '${test_methods.sample_one_cols}'
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	209 --sample_two_cols '${test_methods.sample_two_cols}'
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	210 $test_methods.initial_lexsort
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	211 #elif str($test_methods.test_methods_opts) == "kendalltau":
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	212 --sample_one_cols '${test_methods.sample_one_cols}'
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	213 --sample_two_cols '${test_methods.sample_two_cols}'
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	214 $test_methods.initial_lexsort
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	215 #elif str($test_methods.test_methods_opts) == "mannwhitneyu":
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	216 --sample_one_cols '${test_methods.sample_one_cols}'
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	217 --sample_two_cols '${test_methods.sample_two_cols}'
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	218 $test_methods.mwu_use_continuity
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	219 #elif str($test_methods.test_methods_opts) == "ttest_ind":
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	220 --sample_one_cols '${test_methods.sample_one_cols}'
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	221 --sample_two_cols '${test_methods.sample_two_cols}'
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	222 $test_methods.equal_var
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	223 #elif str($test_methods.test_methods_opts) == "ttest_rel":
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	224 --sample_one_cols '${test_methods.sample_one_cols}'
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	225 --sample_two_cols '${test_methods.sample_two_cols}'
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	226 --axis "${test_methods.axis}"
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	227 #elif str($test_methods.test_methods_opts) == "zmap":
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	228 --sample_one_cols '${test_methods.sample_one_cols}'
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	229 --sample_two_cols '${test_methods.sample_two_cols}'
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	230 #if str($test_methods.ddof).strip():
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	231 --ddof '${test_methods.ddof}'
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	232 #end if
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	233 #elif str($test_methods.test_methods_opts) == "binned_statistic":
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	234 --sample_one_cols '${test_methods.sample_one_cols}'
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	235 --sample_two_cols '${test_methods.sample_two_cols}'
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	236 #if str($test_methods.mf).strip():
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	237 --mf '${test_methods.mf}'
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	238 #end if
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	239 #if str($test_methods.nf).strip():
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	240 --nf '${test_methods.nf}'
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	241 #end if
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	242 --statistic '${test_methods.statistic}'
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	243 --b '${test_methods.b}'
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	244 #elif str($test_methods.test_methods_opts) == "scoreatpercentile":
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	245 --sample_one_cols "${test_methods.sample_one_cols}"
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	246 --sample_two_cols "${test_methods.sample_two_cols}"
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	247 #if str($test_methods.mf).strip():
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	248 --mf '${test_methods.mf}'
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	249 #end if
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	250 #if str($test_methods.nf).strip():
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	251 --nf '${test_methods.nf}'
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	252 #end if
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	253 --interpolation '${test_methods.interpolation}'
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	254 #elif str($test_methods.test_methods_opts) == "mood":
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	255 --axis "${test_methods.axis}"
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	256 --sample_one_cols "${test_methods.sample_one_cols}"
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	257 --sample_two_cols "${test_methods.sample_two_cols}"
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	258 #elif str($test_methods.test_methods_opts) == "shapiro":
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	259 --sample_one_cols "${test_methods.sample_one_cols}"
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	260 #elif str($test_methods.test_methods_opts) == "bartlett" or str($test_methods.test_methods_opts) == "f_oneway" or str($test_methods.test_methods_opts) == "kruskal" or str($test_methods.test_methods_opts) == "friedmanchisquare" or str($test_methods.test_methods_opts) == "obrientransform":
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	261 --sample_cols "#echo ';'.join( [str($list.sample_cols) for $list in $test_methods.samples] )#"
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	262 #elif str($test_methods.test_methods_opts) == "levene":
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	263 --sample_cols "#echo ';'.join( [str($list.sample_cols) for $list in $test_methods.samples] )#"
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	264 --center "${test_methods.center}"
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	265 #if str($test_methods.proportiontocut).strip():
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	266 --proportiontocut "${test_methods.proportiontocut}"
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	267 #end if
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	268 #elif str($test_methods.test_methods_opts) == "fligner":
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	269 --sample_cols "#echo ';'.join( [str($list.sample_cols) for $list in $test_methods.samples] )#"
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	270 --center "${test_methods.center}"
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	271 #if str($test_methods.proportiontocut).strip():
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	272 --proportiontocut "${test_methods.proportiontocut}"
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	273 #end if
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	274 #elif str($test_methods.test_methods_opts) == "median_test":
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	275 --sample_cols "#echo ';'.join( [str($list.sample_cols) for $list in $test_methods.samples] )#"
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	276 $test_methods.correction
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	277 #if str($test_methods.lambda_).strip():
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	278 --lambda_ "${test_methods.lambda_}"
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	279 #end if
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	280 --ties '${test_methods.ties}'
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	281 #end if
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	282 ]]></command>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	283 <inputs>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	284 <param name="infile" type="data" format="tabular" label="Sample file" help="tabular file containing the observations"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	285 <conditional name="test_methods">
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	286 <param name="test_methods_opts" type="select" label="Select a statistical test method">
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	287 <option value="describe">Computes several descriptive statistics of the passed array</option>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	288 <option value="gmean">Compute the geometric mean along the specified axis</option>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	289 <option value="hmean">Calculates the harmonic mean along the specified axis</option>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	290 <option value="kurtosis">Computes the kurtosis (Fisher or Pearson) of a dataset</option>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	291 <option value="kurtosistest">Tests whether a dataset has normal kurtosis</option>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	292 <option value="mode">show the most common value in the passed array</option>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	293 <option value="moment">Calculates the nth moment about the mean for a sample</option>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	294 <option value="normaltest">Tests whether a sample differs from a normal distribution</option>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	295 <option value="skew">Computes the skewness of a data set.</option>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	296 <option value="skewtest">Tests whether the skew is different from the normal distribution.</option>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	297 <option value="tmean">Compute the trimmed mean</option>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	298 <option value="tvar">Compute the trimmed variance</option>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	299 <option value="tmin">Compute the trimmed minimum</option>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	300 <option value="tmax">Compute the trimmed maximum</option>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	301 <option value="tstd">Compute the trimmed sample standard deviation</option>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	302 <option value="tsem">Compute the trimmed standard error of the mean</option>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	303 <option value="nanmean">Compute the mean ignoring nans</option>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	304 <option value="nanstd">Compute the standard deviation ignoring nans</option>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	305 <option value="nanmedian">Compute the median ignoring nan values.</option>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	306 <option value="variation">Computes the coefficient of variation, the ratio of the biased standard deviation to the mean.</option>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	307 <option value="cumfreq">Returns a cumulative frequency histogram, using the histogram function</option>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	308 <option value="histogram2">Compute histogram using divisions in bins</option>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	309 <option value="histogram">Separates the range into several bins</option>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	310 <option value="itemfreq">Compute frequencies for each number</option>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	311 <option value="percentileofscore">The percentile rank of a score relative to a list of scores</option>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	312 <option value="scoreatpercentile">Calculate the score at a given percentile of the input sequence</option>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	313 <option value="relfreq">Returns a relative frequency histogram, using the histogram function</option>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	314 <option value="binned_statistic">Compute a binned statistic for a set of data</option>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	315 <option value="obrientransform">Computes the O’Brien transform on input data</option>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	316 <option value="signaltonoise">The signal-to-noise ratio of the input data</option>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	317 <option value="bayes_mvs">Bayesian confidence intervals for the mean, var, and std</option>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	318 <option value="sem">Calculates the standard error of the mean of the value</option>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	319 <option value="zmap">Calculates the relative z-scores</option>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	320 <option value="zscore">Calculates the z score of each value in the sample, relative to the sample mean and standard deviation</option>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	321 <option value="sigmaclip">Iterative sigma-clipping of array elements</option>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	322 <option value="threshold">Clip array to a given value</option>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	323 <option value="trimboth">Slices off a proportion of items from both ends of an array</option>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	324 <option value="trim1">Slices off a proportion of items from ONE end of the passed array distribution</option>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	325 <option value="f_oneway">Performs a 1-way ANOVA</option>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	326 <option value="pearsonr">Calculates a Pearson correlation coefficient and the p-value for testing non-correlation.</option>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	327 <option value="spearmanr">Calculates a Spearman rank-order correlation coefficient and the p-value to test for non-correlation</option>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	328 <option value="pointbiserialr">Calculates a point biserial correlation coefficient and the associated p-value</option>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	329 <option value="kendalltau">Calculates Kendall’s tau, a correlation measure for ordinal data</option>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	330 <option value="linregress">This computes a least-squares regression for two sets of measurements</option>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	331 <option value="theilslopes">Computes the Theil-Sen estimator for a set of points (x, y)</option>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	332 <option value="ttest_1samp">Calculates the T-test for the mean of ONE group of scores</option>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	333 <option value="ttest_ind">T-test for the means of TWO INDEPENDENT samples of scores</option>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	334 <option value="ttest_rel">T-test for the means of TWO RELATED samples of scores</option>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	335 <option value="kstest">Perform the Kolmogorov-Smirnov test for goodness of fit.</option>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	336 <option value="chisquare">Calculates a one-way chi square test</option>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	337 <option value="power_divergence">Cressie-Read power divergence statistic and goodness of fit test</option>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	338 <option value="ks_2samp">Computes the Kolmogorov-Smirnov statistic on 2 samples</option>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	339 <option value="mannwhitneyu">Computes the Mann-Whitney rank test on samples x and y</option>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	340 <option value="tiecorrect">Tie correction factor for ties in the Mann-Whitney U and Kruskal-Wallis H tests</option>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	341 <option value="rankdata">Assign ranks to data, dealing with ties appropriately</option>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	342 <option value="ranksums">Compute the Wilcoxon rank-sum statistic for two samples</option>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	343 <option value="wilcoxon">Calculate the Wilcoxon signed-rank test</option>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	344 <option value="kruskal">Compute the Kruskal-Wallis H-test for independent samples</option>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	345 <option value="friedmanchisquare">Computes the Friedman test for repeated measurements</option>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	346 <option value="combine_pvalues">Methods for combining the p-values of independent tests bearing upon the same hypothesis</option>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	347 <option value="ansari">Perform the Ansari-Bradley test for equal scale parameters</option>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	348 <option value="bartlett">Perform Bartlett’s test for equal variances</option>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	349 <option value="levene">Perform Levene test for equal variances.</option>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	350 <option value="shapiro">Perform the Shapiro-Wilk test for normality</option>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	351 <option value="anderson">Anderson-Darling test for data coming from a particular distribution</option>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	352 <option value="binom_test">Perform a test that the probability of success is p</option>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	353 <option value="fligner">Perform Fligner’s test for equal variances</option>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	354 <option value="median_test">Mood’s median test</option>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	355 <option value="mood">Perform Mood’s test for equal scale parameters</option>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	356 <option value="boxcox">Return a positive dataset transformed by a Box-Cox power transformation</option>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	357 <option value="boxcox_normmax">Compute optimal Box-Cox transform parameter for input data</option>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	358 <option value="boxcox_llf">The boxcox log-likelihood function</option>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	359 <option value="entropy">Calculate the entropy of a distribution for given probability values</option>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	360 <option value="chi2_contingency">Chi-square test of independence of variables in a contingency table</option>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	361 </param>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	362 <when value="itemfreq">
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	363 <expand macro="macro_sample_one_cols"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	364 </when>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	365 <when value="sem">
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	366 <expand macro="macro_sample_one_cols"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	367 <expand macro="macro_ddof"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	368 </when>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	369 <when value="zscore">
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	370 <expand macro="macro_sample_one_cols"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	371 <expand macro="macro_ddof"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	372 </when>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	373 <when value="relfreq">
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	374 <expand macro="macro_sample_one_cols"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	375 <expand macro="macro_mf"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	376 <expand macro="macro_nf"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	377 <expand macro="macro_b"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	378 </when>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	379 <when value="signaltonoise">
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	380 <expand macro="macro_sample_one_cols"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	381 <expand macro="macro_ddof"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	382 </when>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	383 <when value="bayes_mvs">
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	384 <expand macro="macro_sample_one_cols"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	385 <expand macro="macro_alpha"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	386 </when>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	387 <when value="threshold">
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	388 <expand macro="macro_sample_one_cols"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	389 <expand macro="macro_mf"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	390 <expand macro="macro_nf"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	391 <expand macro="macro_new"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	392 </when>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	393 <when value="trimboth">
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	394 <expand macro="macro_sample_one_cols"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	395 <expand macro="macro_proportiontocut"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	396 </when>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	397 <when value="trim1">
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	398 <expand macro="macro_sample_one_cols"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	399 <expand macro="macro_proportiontocut"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	400 <expand macro="macro_tail"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	401 </when>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	402 <when value="percentileofscore">
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	403 <expand macro="macro_sample_one_cols"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	404 <expand macro="macro_score"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	405 <expand macro="macro_kind"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	406 </when>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	407 <when value="normaltest">
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	408 <expand macro="macro_sample_one_cols"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	409 </when>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	410 <when value="kurtosistest">
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	411 <expand macro="macro_sample_one_cols"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	412 </when>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	413 <when value="describe">
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	414 <expand macro="macro_sample_one_cols"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	415 </when>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	416 <when value="mode">
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	417 <expand macro="macro_sample_one_cols"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	418 </when>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	419 <when value="normaltest">
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	420 <expand macro="macro_sample_one_cols"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	421 </when>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	422 <when value="kurtosistest">
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	423 <expand macro="macro_sample_one_cols"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	424 </when>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	425 <when value="skewtest">
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	426 <expand macro="macro_sample_one_cols"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	427 </when>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	428 <when value="nanmean">
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	429 <expand macro="macro_sample_one_cols"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	430 </when>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	431 <when value="nanmedian">
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	432 <expand macro="macro_sample_one_cols"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	433 </when>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	434 <when value="variation">
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	435 <expand macro="macro_sample_one_cols"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	436 </when>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	437 <when value="tiecorrect">
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	438 <expand macro="macro_sample_one_cols"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	439 </when>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	440 <when value="gmean">
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	441 <expand macro="macro_sample_one_cols"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	442 <expand macro="macro_dtype"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	443 </when>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	444 <when value="hmean">
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	445 <expand macro="macro_sample_one_cols"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	446 <expand macro="macro_dtype"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	447 </when>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	448 <when value="sigmaclip">
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	449 <expand macro="macro_sample_one_cols"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	450 <expand macro="macro_m"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	451 <expand macro="macro_n_in"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	452 </when>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	453 <when value="kurtosis">
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	454 <expand macro="macro_sample_one_cols"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	455 <expand macro="macro_axis"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	456 <expand macro="macro_fisher"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	457 <expand macro="macro_bias"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	458 </when>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	459 <when value="chi2_contingency">
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	460 <expand macro="macro_sample_one_cols"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	461 <expand macro="macro_correction"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	462 <expand macro="macro_lambda_"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	463 </when>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	464 <when value="binom_test">
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	465 <expand macro="macro_sample_one_cols"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	466 <expand macro="macro_n_in"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	467 <expand macro="macro_p"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	468 </when>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	469 <when value="moment">
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	470 <expand macro="macro_sample_one_cols"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	471 <expand macro="macro_n_moment"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	472 </when>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	473 <when value="skew">
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	474 <expand macro="macro_sample_one_cols"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	475 <expand macro="macro_bias"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	476 </when>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	477 <when value="tmean">
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	478 <expand macro="macro_sample_one_cols"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	479 <expand macro="macro_mf"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	480 <expand macro="macro_nf"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	481 <expand macro="macro_inclusive1"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	482 <expand macro="macro_inclusive2"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	483 </when>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	484 <when value="tmin">
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	485 <expand macro="macro_sample_one_cols"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	486 <expand macro="macro_mf"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	487 <expand macro="macro_inclusive"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	488 </when>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	489 <when value="tmax">
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	490 <expand macro="macro_sample_one_cols"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	491 <expand macro="macro_nf"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	492 <expand macro="macro_inclusive"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	493 </when>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	494 <when value="tvar">
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	495 <expand macro="macro_sample_one_cols"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	496 <expand macro="macro_mf"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	497 <expand macro="macro_nf"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	498 <expand macro="macro_inclusive1"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	499 <expand macro="macro_inclusive2"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	500 </when>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	501 <when value="tstd">
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	502 <expand macro="macro_sample_one_cols"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	503 <expand macro="macro_mf"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	504 <expand macro="macro_nf"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	505 <expand macro="macro_inclusive1"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	506 <expand macro="macro_inclusive2"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	507 </when>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	508 <when value="tsem">
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	509 <expand macro="macro_sample_one_cols"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	510 <expand macro="macro_mf"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	511 <expand macro="macro_nf"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	512 <expand macro="macro_inclusive1"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	513 <expand macro="macro_inclusive2"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	514 </when>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	515 <when value="nanstd">
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	516 <expand macro="macro_sample_one_cols"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	517 <expand macro="macro_bias"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	518 </when>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	519 <when value="histogram">
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	520 <expand macro="macro_sample_one_cols"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	521 <expand macro="macro_mf"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	522 <expand macro="macro_nf"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	523 <expand macro="macro_b"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	524 <expand macro="macro_printextras"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	525
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	526 </when>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	527 <when value="cumfreq">
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	528 <expand macro="macro_sample_one_cols"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	529 <expand macro="macro_mf"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	530 <expand macro="macro_nf"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	531 <expand macro="macro_b"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	532 </when>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	533 <when value="boxcox">
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	534 <expand macro="macro_sample_one_cols"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	535 <expand macro="macro_imbda"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	536 <expand macro="macro_alpha"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	537 </when>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	538 <when value="boxcox_llf">
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	539 <expand macro="macro_sample_one_cols"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	540 <expand macro="macro_imbda"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	541 </when>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	542 <when value="boxcox_normmax">
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	543 <expand macro="macro_sample_one_cols"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	544 <expand macro="macro_mf"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	545 <expand macro="macro_nf"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	546 <expand macro="macro_method"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	547 </when>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	548 <when value="anderson">
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	549 <expand macro="macro_sample_one_cols"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	550 <expand macro="macro_dist"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	551 </when>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	552 <when value="rankdata">
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	553 <expand macro="macro_sample_one_cols"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	554 <expand macro="macro_md"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	555 </when>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	556 <when value="kstest">
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	557 <expand macro="macro_sample_one_cols"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	558 <expand macro="macro_cdf"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	559 <expand macro="macro_ni"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	560 <expand macro="macro_alternative"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	561 <expand macro="macro_mode"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	562 </when>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	563
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	564 <when value="spearmanr">
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	565 <expand macro="macro_sample_one_cols"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	566 <expand macro="macro_sample_two_cols"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	567 </when>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	568 <when value="ranksums">
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	569 <expand macro="macro_sample_one_cols"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	570 <expand macro="macro_sample_two_cols"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	571 </when>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	572 <when value="ansari">
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	573 <expand macro="macro_sample_one_cols"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	574 <expand macro="macro_sample_two_cols"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	575 </when>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	576 <when value="linregress">
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	577 <expand macro="macro_sample_one_cols"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	578 <expand macro="macro_sample_two_cols"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	579 </when>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	580 <when value="histogram2">
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	581 <expand macro="macro_sample_one_cols"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	582 <expand macro="macro_sample_two_cols"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	583 </when>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	584 <when value="pearsonr">
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	585 <expand macro="macro_sample_one_cols"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	586 <expand macro="macro_sample_two_cols"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	587 </when>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	588 <when value="pointbiserialr">
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	589 <expand macro="macro_sample_one_cols"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	590 <expand macro="macro_sample_two_cols"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	591 </when>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	592 <when value="ttest_1samp">
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	593 <expand macro="macro_sample_one_cols"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	594 <expand macro="macro_sample_two_cols"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	595 </when>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	596 <when value="ks_2samp">
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	597 <expand macro="macro_sample_one_cols"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	598 <expand macro="macro_sample_two_cols"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	599 </when>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	600 <when value="kendalltau">
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	601 <expand macro="macro_sample_one_cols"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	602 <expand macro="macro_sample_two_cols"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	603 <expand macro="macro_initial_lexsort"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	604
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	605 </when>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	606 <when value="mannwhitneyu">
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	607 <expand macro="macro_sample_one_cols"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	608 <expand macro="macro_sample_two_cols"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	609 <expand macro="macro_mwu_use_continuity"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	610 </when>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	611 <when value="ttest_ind">
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	612 <expand macro="macro_sample_one_cols"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	613 <expand macro="macro_sample_two_cols"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	614 <expand macro="macro_equal_var"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	615 </when>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	616 <when value="ttest_rel">
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	617 <expand macro="macro_sample_one_cols"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	618 <expand macro="macro_sample_two_cols"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	619 <expand macro="macro_axis"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	620 </when>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	621 <when value="entropy">
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	622 <expand macro="macro_sample_one_cols"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	623 <expand macro="macro_sample_two_cols"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	624 <expand macro="macro_base"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	625 </when>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	626 <when value="theilslopes">
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	627 <expand macro="macro_sample_one_cols"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	628 <expand macro="macro_sample_two_cols"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	629 <expand macro="macro_alpha"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	630 </when>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	631 <when value="zmap">
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	632 <expand macro="macro_sample_one_cols"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	633 <expand macro="macro_sample_two_cols"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	634 <expand macro="macro_ddof"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	635 </when>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	636 <when value="chisquare">
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	637 <expand macro="macro_sample_one_cols"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	638 <expand macro="macro_sample_two_cols"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	639 <expand macro="macro_ddof"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	640 </when>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	641 <when value="power_divergence">
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	642 <expand macro="macro_sample_one_cols"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	643 <expand macro="macro_sample_two_cols"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	644 <expand macro="macro_lambda_"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	645 <expand macro="macro_ddof"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	646 </when>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	647 <when value="combine_pvalues">
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	648 <expand macro="macro_sample_one_cols"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	649 <expand macro="macro_sample_two_cols"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	650 <expand macro="macro_med"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	651 </when>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	652 <when value="mood">
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	653 <expand macro="macro_sample_one_cols"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	654 <expand macro="macro_sample_two_cols"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	655 <expand macro="macro_axis"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	656 </when>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	657 <when value="shapiro">
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	658 <expand macro="macro_sample_one_cols"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	659 </when>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	660 <when value="wilcoxon">
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	661 <expand macro="macro_sample_one_cols"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	662 <expand macro="macro_sample_two_cols"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	663 <expand macro="macro_zero_method"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	664 <expand macro="macro_correction"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	665 </when>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	666 <when value="scoreatpercentile">
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	667 <expand macro="macro_sample_one_cols"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	668 <expand macro="macro_sample_two_cols"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	669 <expand macro="macro_mf"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	670 <expand macro="macro_nf"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	671 <expand macro="macro_interpolation"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	672 </when>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	673 <when value="binned_statistic">
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	674 <expand macro="macro_sample_one_cols"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	675 <expand macro="macro_sample_two_cols"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	676 <expand macro="macro_mf"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	677 <expand macro="macro_nf"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	678 <expand macro="macro_b"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	679 <expand macro="macro_statistic"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	680 </when>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	681 <when value="fligner">
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	682 <expand macro="macro_proportiontocut"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	683 <expand macro="macro_center"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	684 <expand macro="macro_sample_cols_min2"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	685 </when>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	686 <when value="f_oneway">
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	687 <expand macro="macro_sample_cols_min2"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	688 </when>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	689 <when value="kruskal">
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	690 <expand macro="macro_sample_cols_min2"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	691 </when>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	692 <when value="friedmanchisquare">
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	693 <expand macro="macro_sample_cols_min3"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	694 </when>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	695 <when value="bartlett">
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	696 <expand macro="macro_sample_cols_min2"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	697 </when>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	698 <when value="levene">
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	699 <expand macro="macro_proportiontocut"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	700 <expand macro="macro_center"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	701 <expand macro="macro_sample_cols_min2"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	702 </when>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	703 <when value="obrientransform">
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	704 <expand macro="macro_sample_cols_min2"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	705 </when>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	706 <when value="median_test">
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	707 <expand macro="macro_ties"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	708 <expand macro="macro_correction"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	709 <expand macro="macro_lambda_"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	710 <expand macro="macro_sample_cols_min2"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	711 </when>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	712 </conditional>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	713 </inputs>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	714 <outputs>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	715 <data format="tabular" name="outfile" label="${tool.name} on ${on_string}" />
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	716 </outputs>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	717 <tests>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	718 <!-- Test 01 -->
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	719 <test>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	720 <param name="infile" value="input.tabular"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	721 <output name="outfile" file="boxcox_normmax2.tabular"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	722 <param name="sample_one_cols" value="1,2,3,4"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	723 <param name="test_methods_opts" value="boxcox_normmax"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	724 <param name="method" value="pearsonr"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	725 <param name="mf" value="-2.0"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	726 <param name="nf" value="2.0"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	727 </test>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	728 <test>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	729 <param name="infile" value="input.tabular"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	730 <output name="outfile" file="normaltest.tabular" lines_diff="4"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	731 <param name="sample_one_cols" value="1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	732 <param name="test_methods_opts" value="normaltest"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	733 </test>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	734 <test>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	735 <param name="infile" value="input.tabular"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	736 <output name="outfile" file="tmin.tabular"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	737 <param name="sample_one_cols" value="1,2,3,4,5,6"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	738 <param name="test_methods_opts" value="tmin"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	739 <param name="mf" value="10.0"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	740 <param name="inclusive" value="True"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	741 </test>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	742 <test>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	743 <param name="infile" value="input.tabular"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	744 <output name="outfile" file="shapiro2.tabular"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	745 <param name="sample_one_cols" value="1,2,3,4,8,9"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	746 <param name="test_methods_opts" value="shapiro"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	747 </test>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	748 <!-- Test 05 -->
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	749 <test>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	750 <param name="infile" value="input.tabular"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	751 <output name="outfile" file="obrientransform.tabular"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	752 <repeat name="samples">
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	753 <param name="sample_cols" value="1,2,3,4"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	754 </repeat>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	755 <repeat name="samples">
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	756 <param name="sample_cols" value="5,6,7,8"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	757 </repeat>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	758 <param name="test_methods_opts" value="obrientransform"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	759 </test>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	760 <test>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	761 <param name="infile" value="input.tabular"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	762 <output name="outfile" file="median_test_result1.tabular"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	763 <repeat name="samples">
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	764 <param name="sample_cols" value="1,2,3,4"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	765 </repeat>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	766 <repeat name="samples">
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	767 <param name="sample_cols" value="5,6,7,8"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	768 </repeat>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	769 <repeat name="samples">
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	770 <param name="sample_cols" value="9,10,11,12"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	771 </repeat>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	772 <param name="test_methods_opts" value="median_test"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	773 <param name="ties" value="above"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	774 <param name="correction" value="True"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	775 <param name="lambda_" value="1"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	776 </test>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	777 <test>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	778 <param name="infile" value="input.tabular"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	779 <output name="outfile" file="wilcoxon_result1.tabular"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	780 <param name="sample_one_cols" value="1,2,3,4,5,6,7,8,9,10"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	781 <param name="sample_two_cols" value="11,12,13,14,15,16,17,18,19,20"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	782 <param name="test_methods_opts" value="wilcoxon"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	783 <param name="zero_method" value="pratt"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	784 <param name="correction" value="False"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	785 </test>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	786 <test>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	787 <param name="infile" value="input.tabular"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	788 <output name="outfile" file="percentileofscore1.tabular"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	789 <param name="sample_one_cols" value="1,2,3,4"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	790 <param name="sample_two_cols" value="5,6,7,8"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	791 <param name="test_methods_opts" value="percentileofscore"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	792 <param name="score" value="1"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	793 <param name="kind" value="rank"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	794 </test>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	795 <test>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	796 <param name="infile" value="input.tabular"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	797 <output name="outfile" file="percentileofscore2.tabular"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	798 <param name="sample_one_cols" value="1,2,3,4"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	799 <param name="sample_two_cols" value="5,6,7,8"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	800 <param name="test_methods_opts" value="percentileofscore"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	801 <param name="score" value="2"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	802 <param name="kind" value="mean"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	803 </test>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	804 <!-- Test 10 -->
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	805 <test>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	806 <param name="infile" value="input.tabular"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	807 <output name="outfile" file="trim1.tabular"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	808 <param name="sample_one_cols" value="1,2,3,4,5,6"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	809 <param name="test_methods_opts" value="trim1"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	810 <param name="tail" value="left"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	811 <param name="proportiontocut" value="1.0"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	812 </test>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	813 <test>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	814 <param name="infile" value="input.tabular"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	815 <output name="outfile" file="scoreatpercentile.tabular"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	816 <param name="sample_one_cols" value="1,2,3,4"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	817 <param name="sample_two_cols" value="11,12,13,14"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	818 <param name="test_methods_opts" value="scoreatpercentile"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	819 <param name="mf" value="5.0"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	820 <param name="nf" value="50.0"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	821 <param name="interpolation" value="lower"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	822 </test>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	823 <test>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	824 <param name="infile" value="input.tabular"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	825 <output name="outfile" file="anderson.tabular"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	826 <param name="sample_one_cols" value="1,2,3,4"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	827 <param name="test_methods_opts" value="anderson"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	828 <param name="dist" value="expon"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	829 </test>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	830 <test>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	831 <param name="infile" value="input.tabular"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	832 <output name="outfile" file="boxcox_normmax.tabular" lines_diff="14"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	833 <param name="sample_one_cols" value="1,2,3,4"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	834 <param name="test_methods_opts" value="boxcox_normmax"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	835 <param name="method" value="mle"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	836 <param name="mf" value="-3.0"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	837 <param name="nf" value="3.0"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	838 </test>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	839 <test>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	840 <param name="infile" value="input.tabular"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	841 <output name="outfile" file="f_oneway.tabular"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	842 <repeat name="samples">
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	843 <param name="sample_cols" value="1,2,3,4"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	844 </repeat>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	845 <repeat name="samples">
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	846 <param name="sample_cols" value="5,6,7,8"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	847 </repeat>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	848 <param name="test_methods_opts" value="f_oneway"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	849 </test>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	850 <!-- Test 15 -->
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	851 <test>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	852 <param name="infile" value="input.tabular"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	853 <output name="outfile" file="shapiro.tabular"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	854 <param name="sample_one_cols" value="1,2,3,4"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	855 <param name="test_methods_opts" value="shapiro"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	856 </test>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	857 <!--
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	858 Fail with the following error:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	859 ValueError: For each axis slice, the sum of the observed frequencies must agree
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	860 with the sum of the expected frequencies to a relative tolerance of 1e-08, but
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	861 the percent differences are: 0.08823529411764706
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	862 <test>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	863 <param name="infile" value="input.tabular"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	864 <output name="outfile" file="power_divergence.tabular"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	865 <param name="sample_one_cols" value="1,2,3,4"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	866 <param name="sample_two_cols" value="5,6,7,8"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	867 <param name="test_methods_opts" value="power_divergence"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	868 <param name="ddof" value="1"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	869 <param name="lambda_" value="1"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	870 </test>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	871 -->
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	872 <test>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	873 <param name="infile" value="input.tabular"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	874 <output name="outfile" file="itemfreq.tabular"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	875 <param name="sample_one_cols" value="1,2,3,4,5,6,7,8,9,10"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	876 <param name="test_methods_opts" value="itemfreq"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	877 </test>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	878 <test>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	879 <param name="infile" value="input.tabular"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	880 <output name="outfile" file="trimboth.tabular"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	881 <param name="sample_one_cols" value="1,2,3,4,5,6,7,8,9,10"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	882 <param name="proportiontocut" value="0"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	883 <param name="test_methods_opts" value="trimboth"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	884 </test>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	885 <test>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	886 <param name="infile" value="input.tabular"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	887 <output name="outfile" file="tmean.tabular"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	888 <param name="sample_one_cols" value="1,2,3,4,5,6"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	889 <param name="test_methods_opts" value="tmean"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	890 <param name="mf" value="0"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	891 <param name="nf" value="50"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	892 <param name="inclusive1" value="True"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	893 <param name="inclusive2" value="True"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	894 </test>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	895 <!-- Test 20 -->
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	896 <test>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	897 <param name="infile" value="input.tabular"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	898 <output name="outfile" file="tvar.tabular"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	899 <param name="sample_one_cols" value="1,2,3,4,5,6"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	900 <param name="test_methods_opts" value="tvar"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	901 <param name="mf" value="0"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	902 <param name="nf" value="50"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	903 <param name="inclusive1" value="True"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	904 <param name="inclusive2" value="True"/>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	905 </test>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	906 </tests>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	907 <help>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	908
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	909 .. class:: warningmark
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	910
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	911
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	912 Computes a large number of probability distributions as well as a statistical functions of any kind.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	913 For more informations have a look at the `SciPy site`_.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	914
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	915 .. _`SciPy site`: http://docs.scipy.org/doc/scipy/reference/stats.html
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	916
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	917
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	918 -----
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	919
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	920 ========
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	921 Describe
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	922 ========
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	923
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	924 Computes several descriptive statistics for samples x
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	925
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	926 -----
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	927
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	928 The output are:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	929
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	930 size of the data : int
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	931
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	932 length of data along axis
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	933
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	934 (min, max): tuple of ndarrays or floats
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	935
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	936 minimum and maximum value of data array
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	937
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	938 arithmetic mean : ndarray or float
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	939
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	940 mean of data along axis
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	941
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	942 unbiased variance : ndarray or float
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	943
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	944 variance of the data along axis, denominator is number of observations minus one.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	945
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	946 biased skewness : ndarray or float
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	947
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	948 skewness, based on moment calculations with denominator equal to the number of observations, i.e. no degrees of freedom correction
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	949
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	950 biased kurtosis : ndarray or float
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	951
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	952 kurtosis (Fisher), the kurtosis is normalized so that it is zero for the normal distribution. No degrees of freedom or bias correction is used.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	953
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	954 example:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	955
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	956 describe([4,417,8,3]) the result is (4,(3.0, 417.0),108.0,42440.6666667 ,1.15432044278, -0.666961688151)
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	957
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	958
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	959 =====
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	960 Gmean
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	961 =====
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	962
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	963 Compute the geometric mean along the specified axis.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	964
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	965 Returns the geometric average of the array elements. That is: n-th root of (x1 * x2 * ... * xn)
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	966
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	967 -----
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	968
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	969 The output are:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	970
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	971 gmean : ndarray
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	972
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	973 see dtype parameter above
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	974
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	975 example:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	976
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	977 stats.gmean([4,17,8,3],dtype='float64') the result is (6.35594365562)
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	978
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	979 =====
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	980 Hmean
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	981 =====
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	982
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	983 py.stats.hmean(a, axis=0, dtype=None)[source]
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	984 Calculates the harmonic mean along the specified axis.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	985
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	986 That is: n / (1/x1 + 1/x2 + ... + 1/xn)
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	987
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	988 The output are:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	989
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	990 hmean : ndarray
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	991
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	992 see dtype parameter above
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	993
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	994
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	995 example:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	996
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	997 stats.hmean([4,17,8,3],dtype='float64')the result is (5.21405750799)
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	998
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	999 ========
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1000 Kurtosis
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1001 ========
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1002
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1003 Computes the kurtosis (Fisher or Pearson) of a dataset.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1004
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1005 Kurtosis is the fourth central moment divided by the square of the variance. If Fisher’s definition is used, then 3.0 is subtracted from the result to give 0.0 for a normal distribution.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1006
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1007 If bias is False then the kurtosis is calculated using k statistics to eliminate bias coming from biased moment estimators
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1008
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1009 -----
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1010
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1011 Computes the kurtosis for samples x .
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1012
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1013 The output are:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1014
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1015 kurtosis : array
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1016
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1017 The kurtosis of values along an axis. If all values are equal, return -3 for Fisher’s definition and 0 for Pearson’s definition.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1018
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1019 example:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1020
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1021 kurtosis([4,417,8,3],0,true,true) the result is (-0.666961688151)
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1022
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1023 =============
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1024 Kurtosis Test
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1025 =============
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1026
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1027 Tests whether a dataset has normal kurtosis
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1028
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1029 This function tests the null hypothesis that the kurtosis of the population from which the sample was drawn is that of the normal distribution: kurtosis = 3(n-1)/(n+1).
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1030
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1031 -----
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1032
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1033 Computes the Z-value and p-value about samples x.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1034
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1035 kurtosistest only valid for n>=20.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1036
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1037 The output are:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1038
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1039 z-score : float
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1040
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1041 The computed z-score for this test
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1042
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1043 p-value : float
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1044
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1045 The 2-sided p-value for the hypothesis test
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1046
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1047
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1048 example:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1049
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1050 kurtosistest([4,17,8,3,30,45,5,3,4,17,8,3,30,45,5,3,4,17,8,3,30,45,5,3]) the result is (0.29775013081425117, 0.7658938788569033)
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1051
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1052 ====
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1053 Mode
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1054 ====
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1055
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1056 Returns an array of the modal value in the passed array.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1057
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1058 If there is more than one such value, only the first is returned. The bin-count for the modal bins is also returned.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1059
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1060 -----
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1061
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1062 Computes the most common value for samples x .
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1063
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1064 The output are:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1065
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1066 vals : ndarray
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1067
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1068 Array of modal values.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1069
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1070 counts : ndarray
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1071
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1072 Array of counts for each mode.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1073
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1074
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1075 example:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1076
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1077 mode([4,417,8,3]) the result is ([ 3.], [ 1.])
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1078
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1079 ======
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1080 Moment
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1081 ======
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1082
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1083 Calculates the nth moment about the mean for a sample.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1084
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1085 Generally used to calculate coefficients of skewness and kurtosis.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1086
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1087 -----
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1088
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1089 Computes the nth moment about the mean for samples x .
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1090
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1091 The output are:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1092
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1093 n-th central moment : ndarray or float
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1094
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1095 The appropriate moment along the given axis or over all values if axis is None. The denominator for the moment calculation is the number of observations, no degrees of freedom correction is done.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1096
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1097
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1098 example:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1099
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1100 mode([4,417,8,3],moment=2) the result is (31830.5)
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1101
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1102
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1103 ===========
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1104 Normal Test
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1105 ===========
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1106
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1107 Tests whether a sample differs from a normal distribution.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1108
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1109 This function tests the null hypothesis that a sample comes from a normal distribution. It is based on D’Agostino and Pearson’s test that combines skew and kurtosis to produce an omnibus test of normality.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1110
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1111 -----
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1112
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1113 Computes the k2 and p-value for samples x.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1114
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1115 skewtest is not valid with less than 8 samples.kurtosistest only valid for n>=20.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1116
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1117 The output are:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1118
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1119 k2 : float or array
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1120
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1121 s^2 + k^2, where s is the z-score returned by skewtest and k is the z-score returned by kurtosistest.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1122
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1123 p-value : float or array
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1124
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1125 A 2-sided chi squared probability for the hypothesis test.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1126
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1127
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1128 example:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1129
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1130 normaltest([4,17,8,3,30,45,5,3,4,17,8,3,30,45,5,3,4,17,8,3,30,45,5,3]) the result is (5.8877986151838, 0.052659990380181286)
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1131
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1132 ====
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1133 Skew
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1134 ====
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1135
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1136 Computes the skewness of a data set.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1137
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1138 For normally distributed data, the skewness should be about 0. A skewness value > 0 means that there is more weight in the left tail of the distribution. The function skewtest can be used to determine if the skewness value is close enough to 0, statistically speaking.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1139
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1140 -----
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1141
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1142 Computes the skewness from samples x.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1143
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1144
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1145 The output are:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1146
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1147 skewness : ndarray
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1148
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1149 The skewness of values along an axis, returning 0 where all values are equal.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1150
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1151
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1152 example:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1153
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1154 kurtosistest([4,417,8,3]) the result is (1.1543204427775307)
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1155
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1156
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1157 =========
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1158 Skew Test
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1159 =========
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1160
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1161 Tests whether the skew is different from the normal distribution.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1162
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1163 This function tests the null hypothesis that the skewness of the population that the sample was drawn from is the same as that of a corresponding normal distribution.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1164
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1165 -----
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1166
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1167 Computes the z-value and p-value from samples x.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1168
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1169 skewtest is not valid with less than 8 samples
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1170
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1171 The output are:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1172
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1173 z-score : float
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1174
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1175 The computed z-score for this test.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1176
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1177 p-value : float
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1178
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1179 a 2-sided p-value for the hypothesis test
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1180
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1181 example:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1182
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1183 skewtest([4,17,8,3,30,45,5,3,4,17,8,3,30,45,5,3,4,17,8,3,30,45,5,3]) the result is (2.40814108282,0.0160339834731)
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1184
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1185 ======
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1186 tmean
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1187 ======
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1188
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1189 Compute the trimmed mean.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1190
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1191 This function finds the arithmetic mean of given values, ignoring values outside the given limits.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1192
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1193 -----
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1194
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1195 Computes the mean of samples x,considering the lower and higher limits.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1196
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1197 Values in the input array less than the lower limit or greater than the upper limit will be ignored
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1198
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1199 for inclusive,These flags determine whether values exactly equal to the lower or upper limits are included. The default value is (True, True)
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1200
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1201 The output are:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1202
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1203 tmean : float
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1204
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1205 The computed mean for this test.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1206
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1207
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1208 example:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1209
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1210 tmean([4,17,8,3],(0,20),(true,true)) the result is (8.0)
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1211
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1212 =====
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1213 tvar
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1214 =====
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1215
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1216 Compute the trimmed variance
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1217
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1218 This function computes the sample variance of an array of values, while ignoring values which are outside of given limits
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1219
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1220 -----
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1221
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1222 Computes the variance of samples x,considering the lower and higher limits.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1223
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1224 Values in the input array less than the lower limit or greater than the upper limit will be ignored
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1225
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1226 for inclusive,These flags determine whether values exactly equal to the lower or upper limits are included. The default value is (True, True)
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1227
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1228 The output are:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1229
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1230 tvar : float
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1231
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1232 The computed variance for this test.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1233
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1234
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1235 example:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1236
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1237 tvar([4,17,8,3],(0,99999),(true,true)) the result is (40.6666666667)
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1238
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1239 =====
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1240 tmin
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1241 =====
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1242
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1243 Compute the trimmed minimum.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1244
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1245 This function finds the arithmetic minimum of given values, ignoring values outside the given limits.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1246
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1247 -----
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1248
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1249 Compute the trimmed minimum
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1250
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1251 This function finds the miminum value of an array a along the specified axis, but only considering values greater than a specified lower limit.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1252
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1253 The output are:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1254
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1255 tmin : float
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1256
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1257 The computed min for this test.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1258
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1259
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1260 example:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1261
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1262 stats.tmin([4,17,8,3],2,0,'true') the result is (3.0)
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1263
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1264 ============
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1265 tmax
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1266 ============
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1267
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1268 Compute the trimmed maximum.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1269
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1270 This function finds the arithmetic maximum of given values, ignoring values outside the given limits.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1271
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1272 This function computes the maximum value of an array along a given axis, while ignoring values larger than a specified upper limit.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1273
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1274 The output are:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1275
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1276 tmax : float
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1277
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1278 The computed max for this test.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1279
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1280
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1281 example:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1282
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1283 stats.tmax([4,17,8,3],50,0,'true') the result is (17.0)
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1284
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1285 ============
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1286 tstd
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1287 ============
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1288
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1289 Compute the trimmed sample standard deviation
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1290
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1291 This function finds the sample standard deviation of given values, ignoring values outside the given limits.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1292
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1293 -----
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1294
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1295 Computes the deviation of samples x,considering the lower and higher limits.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1296
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1297 Values in the input array less than the lower limit or greater than the upper limit will be ignored
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1298
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1299 for inclusive,These flags determine whether values exactly equal to the lower or upper limits are included. The default value is (True, True)
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1300
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1301 The output are:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1302
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1303 tstd : float
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1304
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1305 The computed deviation for this test.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1306
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1307
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1308 example:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1309
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1310 tstd([4,17,8,3],(0,99999),(true,true)) the result is (6.37704215657)
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1311
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1312
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1313 ============
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1314 tsem
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1315 ============
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1316
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1317 Compute the trimmed standard error of the mean.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1318
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1319 This function finds the standard error of the mean for given values, ignoring values outside the given limits.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1320
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1321 -----
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1322
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1323 Computes the standard error of mean for samples x,considering the lower and higher limits.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1324
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1325 Values in the input array less than the lower limit or greater than the upper limit will be ignored
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1326
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1327 for inclusive,These flags determine whether values exactly equal to the lower or upper limits are included. The default value is (True, True)
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1328
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1329 The output are:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1330
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1331 tsem : float
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1332
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1333 The computed the standard error of mean for this test.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1334
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1335
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1336 example:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1337
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1338 tsem([4,17,8,3],(0,99999),(true,true)) the result is (3.18852107828)
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1339
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1340 ========
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1341 nanmean
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1342 ========
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1343
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1344 Compute the mean over the given axis ignoring nans
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1345
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1346 -----
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1347
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1348 Computes the mean for samples x without considering nans
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1349
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1350 The output are:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1351
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1352 m : float
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1353
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1354 The computed the mean for this test.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1355
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1356
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1357 example:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1358
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1359 tsem([4,17,8,3]) the result is (8.0)
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1360
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1361 =======
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1362 nanstd
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1363 =======
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1364
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1365 Compute the standard deviation over the given axis, ignoring nans.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1366
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1367 -----
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1368
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1369 Computes the deviation for samples x without considering nans
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1370
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1371 The output are:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1372
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1373 s : float
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1374
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1375 The computed the standard deviation for this test.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1376
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1377
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1378 example:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1379
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1380 nanstd([4,17,8,3],0,'false') the result is (5.52268050859)
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1381
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1382
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1383 ============
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1384 nanmedian
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1385 ============
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1386
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1387 Computes the median for samples x without considering nans
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1388
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1389 The output are:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1390
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1391 m : float
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1392
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1393 The computed the median for this test.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1394
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1395
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1396 example:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1397
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1398 nanmedian([4,17,8,3]) the result is (6.0)
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1399
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1400
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1401 ============
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1402 variation
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1403 ============
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1404
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1405 Computes the coefficient of variation, the ratio of the biased standard deviation to the mean for samples x
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1406
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1407 The output are:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1408
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1409 ratio: float
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1410
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1411 The ratio of the biased standard deviation to the mean for this test.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1412
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1413
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1414 example:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1415
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1416 variation([4,17,8,3]) the result is (0.690335063574)
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1417
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1418 ============
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1419 cumfreq
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1420 ============
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1421
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1422 Returns a cumulative frequency histogram, using the histogram function.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1423
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1424 The output are:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1425
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1426 cumfreq : ndarray
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1427
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1428 Binned values of cumulative frequency.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1429
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1430 lowerreallimit : float
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1431
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1432 Lower real limit
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1433
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1434 binsize : float
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1435
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1436 Width of each bin.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1437
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1438 extrapoints : int
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1439
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1440 Extra points.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1441
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1442
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1443 example:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1444
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1445 cumfreq([4,17,8,3],defaultreallimits=(2.0,3.5)) the result is ([ 0. 0. 0. 0. 0. 0. 1. 1. 1. 1.],2.0,0.15,3)
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1446
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1447 ==========
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1448 histogram2
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1449 ==========
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1450
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1451 Compute histogram using divisions in bins.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1452
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1453 Count the number of times values from array a fall into numerical ranges defined by bins.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1454
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1455 samples should at least have two numbers.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1456
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1457 The output are:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1458
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1459 histogram2 : ndarray of rank 1
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1460
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1461 Each value represents the occurrences for a given bin (range) of values.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1462
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1463
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1464 example:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1465
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1466 stats.histogram2([4,17,8,3], [30,45,5,3]) the result is (array([ 0, -2, -2, 4]))
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1467
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1468 ============
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1469 histogram
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1470 ============
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1471
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1472 Separates the range into several bins and returns the number of instances in each bin
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1473
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1474 The output are:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1475
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1476 histogram : ndarray
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1477
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1478 Number of points (or sum of weights) in each bin.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1479
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1480 low_range : float
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1481
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1482 Lowest value of histogram, the lower limit of the first bin.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1483
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1484 binsize : float
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1485
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1486 The size of the bins (all bins have the same size).
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1487
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1488 extrapoints : int
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1489
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1490 The number of points outside the range of the histogram.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1491
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1492
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1493 example:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1494
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1495 histogram([4,17,8,3],defaultlimits=(2.0,3.4)) the result is ([ 0. 0. 0. 0. 0. 0. 0. 1. 0. 0.],2.0,0.14,3)
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1496
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1497
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1498 ============
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1499 itemfreq
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1500 ============
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1501
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1502 Computes the frequencies for numbers
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1503
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1504 The output are:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1505
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1506 temfreq : (K, 2) ndarray
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1507 A 2-D frequency table. Column 1 contains sorted, unique values from a, column 2 contains their respective counts.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1508
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1509
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1510 example:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1511
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1512 variation([4,17,8,3]) the result is array([[ 3, 1], [ 4, 1],[ 8, 1],[17, 1]])
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1513
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1514 ===
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1515 Sem
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1516 ===
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1517
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1518 Calculates the standard error of the mean (or standard error of measurement) of the values in the input array.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1519
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1520
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1521 The output are:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1522
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1523 s : ndarray or float
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1524 The standard error of the mean in the sample(s), along the input axis.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1525
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1526
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1527 example:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1528
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1529 variation([4,17,8,3],ddof=1) the result is(3.18852107828)
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1530
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1531 =====
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1532 Z Map
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1533 =====
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1534
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1535 Calculates the relative z-scores.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1536
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1537 Returns an array of z-scores, i.e., scores that are standardized to zero mean and unit variance, where mean and variance are calculated from the comparison array.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1538
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1539
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1540 The output are:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1541
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1542 zscore : array_like
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1543
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1544 Z-scores, in the same shape as scores.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1545
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1546 example:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1547
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1548 stats.zmap([4,17,8,3],[30,45,5,3],ddof=1)the result is[-0.82496302 -0.18469321 -0.62795692 -0.87421454]
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1549
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1550 =======
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1551 Z Score
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1552 =======
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1553
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1554 Calculates the z score of each value in the sample, relative to the sample mean and standard deviation
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1555
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1556
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1557 The output are:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1558
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1559 zscore : array_like
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1560 The z-scores, standardized by mean and standard deviation of input array a.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1561
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1562
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1563 example:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1564
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1565 variation([4,17,8,3],ddof=0) the result is ([-0.72428597 1.62964343 0. -0.90535746])
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1566
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1567 ===============
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1568 Signal to noise
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1569 ===============
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1570
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1571 The signal-to-noise ratio of the input data.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1572
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1573 Returns the signal-to-noise ratio of a, here defined as the mean divided by the standard deviation.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1574
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1575
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1576 The output are:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1577
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1578 s2n : ndarray
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1579 The mean to standard deviation ratio(s) along axis, or 0 where the standard deviation is 0.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1580
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1581
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1582 example:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1583
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1584 variation([4,17,8,3],ddof=0) the result is (1.44857193668)
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1585
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1586 ===================
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1587 Percentile of score
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1588 ===================
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1589
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1590 The percentile rank of a score relative to a list of scores.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1591
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1592 A percentileofscore of, for example, 80% means that 80% of the scores in a are below the given score. In the case of gaps or ties, the exact definition depends on the optional keyword, kind.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1593
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1594 The output are:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1595
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1596 pcos : float
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1597 Percentile-position of score (0-100) relative to a.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1598
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1599
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1600 example:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1601
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1602 percentileofscore([4,17,8,3],score=3,kind='rank') the result is(25.0)
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1603
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1604 ===================
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1605 Score at percentile
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1606 ===================
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1607
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1608 Calculate the score at a given percentile of the input sequence.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1609
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1610 For example, the score at per=50 is the median. If the desired quantile lies between two data points, we interpolate between them, according to the value of interpolation. If the parameter limit is provided, it should be a tuple (lower, upper) of two values.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1611
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1612 The second simple should be in range [0,100].
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1613
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1614 The output are:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1615
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1616 score : float or ndarray
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1617 Score at percentile(s).
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1618
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1619
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1620 example:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1621
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1622 stats.scoreatpercentile([4,17,8,3],[8,3],(0,100),'fraction') the result is array([ 3.24, 3.09])
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1623
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1624 =======
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1625 relfreq
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1626 =======
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1627
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1628 Returns a relative frequency histogram, using the histogram function
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1629
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1630 numbins are the number of bins to use for the histogram.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1631
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1632 The output are:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1633
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1634 relfreq : ndarray
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1635
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1636 Binned values of relative frequency.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1637
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1638 lowerreallimit : float
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1639
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1640 Lower real limit
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1641
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1642 binsize : float
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1643
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1644 Width of each bin.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1645
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1646 extrapoints : int
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1647
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1648 Extra points.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1649
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1650
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1651 example:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1652
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1653 stats.relfreq([4,17,8,3],10,(0,100)) the result is (array([ 0.75, 0.25, 0.0 , 0.0 , 0.0 , 0.0 , 0.0 , 0.0 , 0.0 , 0.0 ]), 0, 10.0, 0)
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1654
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1655 ================
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1656 Binned statistic
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1657 ================
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1658
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1659 Compute a binned statistic for a set of data.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1660
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1661 This is a generalization of a histogram function. A histogram divides the space into bins, and returns the count of the number of points in each bin. This function allows the computation of the sum, mean, median, or other statistic of the values within each bin.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1662
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1663 Y must be the same shape as X
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1664
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1665 The output are:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1666
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1667 statistic : array
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1668
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1669 The values of the selected statistic in each bin.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1670
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1671 bin_edges : array of dtype float
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1672
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1673 Return the bin edges (length(statistic)+1).
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1674
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1675 binnumber : 1-D ndarray of ints
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1676
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1677 This assigns to each observation an integer that represents the bin in which this observation falls. Array has the same length as values.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1678
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1679
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1680 example:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1681
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1682 stats.binned_statistic([4,17,8,3],[30,45,5,3],'sum',10,(0,100)) the result is ([ 38. 45. 0. 0. 0. 0. 0. 0. 0. 0.],[ 0. 10. 20. 30. 40. 50. 60. 70. 80. 90. 100.],[1 2 1 1])
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1683
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1684 ================
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1685 obrientransform
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1686 ================
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1687
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1688 Computes the O’Brien transform on input data (any number of arrays).
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1689
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1690 Used to test for homogeneity of variance prior to running one-way stats.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1691
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1692 It has to have at least two samples.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1693
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1694 The output are:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1695
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1696 obrientransform : ndarray
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1697
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1698 Transformed data for use in an ANOVA. The first dimension of the result corresponds to the sequence of transformed arrays. If the arrays given are all 1-D of the same length, the return value is a 2-D array; otherwise it is a 1-D array of type object, with each element being an ndarray.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1699
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1700
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1701 example:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1702
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1703 stats.obrientransformcenter([4,17,8,3], [30,45,5,3]) the result is (array([[ 16.5 , 124.83333333, -10.16666667, 31.5 ],[ 39.54166667, 877.04166667, 310.375 , 422.04166667]]))
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1704
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1705 =========
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1706 bayes mvs
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1707 =========
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1708
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1709 Bayesian confidence intervals for the mean, var, and std.alpha should be larger than 0,smaller than 1.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1710
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1711
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1712 The output are:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1713
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1714 mean_cntr, var_cntr, std_cntr : tuple
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1715
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1716 The three results are for the mean, variance and standard deviation, respectively. Each result is a tuple of the form:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1717
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1718 (center, (lower, upper))
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1719
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1720 with center the mean of the conditional pdf of the value given the data, and (lower, upper) a confidence interval, centered on the median, containing the estimate to a probability alpha.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1721
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1722 example:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1723
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1724 stats.bayes_mvs([4,17,8,3],0.8) the result is (8.0, (0.49625108326958145, 15.503748916730416));(122.0, (15.611548029617781, 346.74229584218108));(8.8129230241075476, (3.9511451542075475, 18.621017583423871))
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1725
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1726 =========
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1727 sigmaclip
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1728 =========
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1729
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1730 Iterative sigma-clipping of array elements.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1731
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1732 The output array contains only those elements of the input array c that satisfy the conditions
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1733
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1734 The output are:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1735
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1736 c : ndarray
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1737 Input array with clipped elements removed.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1738 critlower : float
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1739 Lower threshold value use for clipping.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1740 critlupper : float
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1741 Upper threshold value use for clipping.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1742
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1743
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1744 example:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1745
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1746 sigmaclip([4,17,8,3]) the result is [ 4. 17. 8. 3.],-14.0907220344,30.0907220344）
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1747
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1748 =========
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1749 threshold
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1750 =========
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1751
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1752 Clip array to a given value.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1753
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1754 Similar to numpy.clip(), except that values less than threshmin or greater than threshmax are replaced by newval, instead of by threshmin and threshmax respectively.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1755
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1756
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1757 The output are:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1758
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1759 out : ndarray
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1760 The clipped input array, with values less than threshmin or greater than threshmax replaced with newval.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1761
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1762 example:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1763
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1764 stats.threshold([4,17,8,3],2,8,0)the result is array([4, 17, 8, 3])
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1765
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1766 ========
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1767 trimboth
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1768 ========
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1769
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1770 Slices off a proportion of items from both ends of an array.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1771
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1772 Slices off the passed proportion of items from both ends of the passed array (i.e., with proportiontocut = 0.1, slices leftmost 10% and rightmost 10% of scores). You must pre-sort the array if you want ‘proper’ trimming. Slices off less if proportion results in a non-integer slice index (i.e., conservatively slices off proportiontocut).
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1773
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1774
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1775 The output are:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1776
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1777 out : ndarray
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1778 Trimmed version of array a.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1779
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1780 example:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1781
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1782 stats.trimboth([4,17,8,3],0.1)the result is array([ 4, 17, 8, 3])
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1783
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1784 =====
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1785 trim1
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1786 =====
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1787
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1788 Slices off a proportion of items from ONE end of the passed array distribution.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1789
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1790 If proportiontocut = 0.1, slices off ‘leftmost’ or ‘rightmost’ 10% of scores. Slices off LESS if proportion results in a non-integer slice index (i.e., conservatively slices off proportiontocut ).
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1791
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1792 The output are:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1793
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1794 trim1 : ndarray
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1795
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1796 Trimmed version of array a
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1797
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1798 example:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1799
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1800 stats.trim1([4,17,8,3],0.5,'left')the result is array([8, 3])
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1801
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1802 =========
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1803 spearmanr
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1804 =========
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1805
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1806 Calculates a Spearman rank-order correlation coefficient and the p-value to test for non-correlation.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1807
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1808 The Spearman correlation is a nonparametric measure of the monotonicity of the relationship between two datasets. Unlike the Pearson correlation, the Spearman correlation does not assume that both datasets are normally distributed. Like other correlation coefficients, this one varies between -1 and +1 with 0 implying no correlation. Correlations of -1 or +1 imply an exact monotonic relationship. Positive correlations imply that as x increases, so does y. Negative correlations imply that as x increases, y decreases.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1809
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1810 The output are:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1811
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1812 rho : float or ndarray (2-D square)
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1813
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1814 Spearman correlation matrix or correlation coefficient (if only 2 variables are given as parameters. Correlation matrix is square with length equal to total number of variables (columns or rows) in a and b combined.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1815
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1816 p-value : float
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1817
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1818 The two-sided p-value for a hypothesis test whose null hypothesis is that two sets of data are uncorrelated, has same dimension as rho.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1819
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1820 example:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1821
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1822 stats.spearmanr([4,17,8,3,30,45,5,3],[5,3,4,17,8,3,30,45])the result is (-0.722891566265, 0.0427539458876)
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1823
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1824 ========
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1825 f oneway
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1826 ========
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1827
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1828 Performs a 1-way ANOVA.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1829
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1830 The one-way ANOVA tests the null hypothesis that two or more groups have the same population mean. The test is applied to samples from two or more groups, possibly with differing sizes.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1831
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1832 The output are:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1833
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1834 F-value : float
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1835
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1836 The computed F-value of the test.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1837
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1838 p-value : float
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1839
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1840 The associated p-value from the F-distribution.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1841
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1842 example:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1843
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1844 stats. f_oneway([4,17,8,3], [30,45,5,3]) the result is (1.43569457222,0.276015080537)
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1845
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1846 =================
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1847 Mann-Whitney rank
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1848 =================
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1849
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1850 Compute the Wilcoxon rank-sum statistic for two samples.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1851
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1852 The Wilcoxon rank-sum test tests the null hypothesis that two sets of measurements are drawn from the same distribution. The alternative hypothesis is that values in one sample are more likely to be larger than the values in the other sample.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1853
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1854 This test should be used to compare two samples from continuous distributions. It does not handle ties between measurements in x and y. For tie-handling and an optional continuity correction use mannwhitneyu.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1855
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1856 -----
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1857
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1858 Computes the Mann-Whitney rank test on samples x and y.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1859
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1860 u : float
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1861
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1862 The Mann-Whitney statistics.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1863
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1864 prob : float
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1865
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1866 One-sided p-value assuming a asymptotic normal distribution.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1867
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1868 ===================
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1869 Ansari-Bradley test
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1870 ===================
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1871
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1872 Perform the Ansari-Bradley test for equal scale parameters
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1873
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1874 The Ansari-Bradley test is a non-parametric test for the equality of the scale parameter of the distributions from which two samples were drawn.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1875
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1876 The p-value given is exact when the sample sizes are both less than 55 and there are no ties, otherwise a normal approximation for the p-value is used.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1877
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1878 -----
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1879
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1880 Computes the Ansari-Bradley test for samples x and y.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1881
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1882 The output are:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1883
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1884 AB : float
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1885
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1886 The Ansari-Bradley test statistic
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1887
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1888 p-value : float
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1889
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1890 The p-value of the hypothesis test
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1891
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1892 example:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1893
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1894 ansari([1,2,3,4],[15,5,20,8,10,12]) the result is (10.0, 0.53333333333333333)
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1895
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1896 ========
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1897 bartlett
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1898 ========
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1899
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1900 Perform Bartlett’s test for equal variances
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1901
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1902 Bartlett’s test tests the null hypothesis that all input samples are from populations with equal variances.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1903
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1904 It has to have at least two samples.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1905
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1906 The output are:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1907
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1908 T : float
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1909
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1910 The test statistic.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1911
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1912 p-value : float
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1913
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1914 The p-value of the test.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1915
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1916
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1917 example:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1918
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1919 stats.bartlett([4,17,8,3], [30,45,5,3]) the result is (2.87507113948,0.0899609995242)
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1920
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1921 ======
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1922 levene
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1923 ======
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1924
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1925 Perform Levene test for equal variances.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1926
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1927 The Levene test tests the null hypothesis that all input samples are from populations with equal variances.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1928
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1929 It has to have at least two samples.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1930
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1931 The output are:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1932
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1933 W : float
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1934
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1935 The test statistic.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1936
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1937 p-value : float
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1938
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1939 The p-value for the test.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1940
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1941
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1942 example:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1943
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1944 stats.levene(center='mean',proportiontocut=0.01,[4,17,8,3], [30,45,5,3]) the result is (11.5803858521,0.014442549362)
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1945
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1946 =======
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1947 fligner
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1948 =======
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1949
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1950 Perform Fligner’s test for equal variances.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1951
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1952 Fligner’s test tests the null hypothesis that all input samples are from populations with equal variances. Fligner’s test is non-parametric in contrast to Bartlett’s test bartlett and Levene’s test levene.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1953
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1954 The output are:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1955
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1956 Xsq : float
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1957
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1958 The test statistic.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1959
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1960 p-value : float
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1961
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1962 The p-value for the hypothesis test.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1963
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1964
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1965 ==========
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1966 linregress
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1967 ==========
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1968
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1969 Calculate a regression line
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1970
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1971 This computes a least-squares regression for two sets of measurements.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1972
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1973 -----
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1974
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1975 Computes the least-squares regression for samples x and y.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1976
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1977 The output are:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1978
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1979 slope : float
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1980
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1981 slope of the regression line
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1982
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1983 intercept : float
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1984
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1985 intercept of the regression line
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1986
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1987 r-value : float
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1988
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1989 correlation coefficient
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1990
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1991 p-value : float
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1992
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1993 two-sided p-value for a hypothesis test whose null hypothesis is that the slope is zero.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1994
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1995 stderr : float
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1996
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1997 Standard error of the estimate
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1998
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	1999 example:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2000
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2001 linregress([4,417,8,3],[30,45,5,3]) the result is (0.0783053989099, 12.2930169177, 0.794515680443,0.205484319557,0.0423191764713)
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2002
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2003 ===========
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2004 ttest 1samp
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2005 ===========
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2006
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2007 Calculates the T-test for the mean of ONE group of scores.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2008
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2009 This is a two-sided test for the null hypothesis that the expected value (mean) of a sample of independent observations a is equal to the given population mean, popmean.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2010
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2011 The output are:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2012
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2013 t : float or array
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2014
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2015 The calculated t-statistic.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2016
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2017 prob : float or array
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2018
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2019 The two-tailed p-value.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2020
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2021 example:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2022
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2023 stats.ttest_1samp([4,17,8,3],[30,45,5,3])the result is (array([ -6.89975053, -11.60412589, 0.94087507, 1.56812512]), array([ 0.00623831, 0.00137449, 0.41617971, 0.21485306]))
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2024
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2025 =========
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2026 ttest ind
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2027 =========
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2028
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2029 Calculates the T-test for the means of TWO INDEPENDENT samples of scores.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2030
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2031 This is a two-sided test for the null hypothesis that 2 independent samples have identical average (expected) values. This test assumes that the populations have identical variances.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2032
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2033 The independent samples t-test is used when two separate sets of independent and identically distributed samples are obtained, one from each of the two populations
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2034 being compared.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2035 -----
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2036 Computes the T-test for the means of independent samples x and y.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2037
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2038 The output are:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2039
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2040 t : float or array
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2041
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2042 The calculated t-statistic.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2043
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2044 prob : float or array
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2045
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2046 The two-tailed p-value.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2047
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2048 example:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2049
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2050 ttest_ind([4,417,8,3],[30,45,5,3]) the result is (0.842956644207,0.431566932748)
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2051
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2052 =========
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2053 ttest rel
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2054 =========
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2055
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2056 Calculates the T-test on TWO RELATED samples of scores, a and b.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2057
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2058 This is a two-sided test for the null hypothesis that 2 related or repeated samples have identical average (expected) values.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2059
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2060 related samples t-tests typically consist of a sample of matched pairs of similar units, or one group of units that has been tested twice (a "repeated measures" t-test)
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2061
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2062 -----
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2063
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2064 Computes the T-test for the means of related samples x and y.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2065
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2066 The output are:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2067
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2068 t : float or array
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2069
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2070 t-statistic
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2071
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2072 prob : float or array
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2073
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2074 two-tailed p-value
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2075
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2076 example:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2077
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2078 ttest_rel([4,417,8,3],[30,45,5,3]) the result is (0.917072474241,0.426732624361)
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2079
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2080 =========
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2081 chisquare
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2082 =========
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2083
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2084 Calculates a one-way chi square test.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2085
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2086 The chi square test tests the null hypothesis that the categorical data has the given frequencies.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2087
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2088 The output are:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2089
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2090 chisq : float or ndarray
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2091
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2092 The chi-squared test statistic. The value is a float if axis is None or f_obs and f_exp are 1-D.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2093
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2094 p : float or ndarray
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2095
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2096 The p-value of the test. The value is a float if ddof and the return value chisq are scalars.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2097
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2098 example:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2099
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2100 stats.chisquare([4,17,8,3],[30,45,5,3],ddof=1)the result is (41.7555555556,8.5683326078e-10)
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2101
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2102 ================
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2103 power divergence
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2104 ================
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2105
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2106 Cressie-Read power divergence statistic and goodness of fit test.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2107
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2108 This function tests the null hypothesis that the categorical data has the given frequencies, using the Cressie-Read power divergence statistic.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2109
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2110 The output are:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2111
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2112 stat : float or ndarray
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2113
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2114 The Cressie-Read power divergence test statistic. The value is a float if axis is None or if` f_obs and f_exp are 1-D.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2115
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2116 p : float or ndarray
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2117
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2118 The p-value of the test. The value is a float if ddof and the return value stat are scalars.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2119
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2120 example:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2121
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2122 stats.power_divergence([4,17,8,3],[30,45,5,3],1,lambda=1)the result is (41.7555555556， 8.5683326078e-10)
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2123
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2124 ==========
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2125 tiecorrect
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2126 ==========
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2127
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2128 Tie correction factor for ties in the Mann-Whitney U and Kruskal-Wallis H tests.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2129
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2130 The output are:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2131
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2132 factor : float
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2133
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2134 Correction factor for U or H.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2135
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2136 example:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2137
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2138 stats.tiecorrect([4,17,8,3,30,45,5,3])the result is (0.988095238095)
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2139
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2140 ========
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2141 rankdata
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2142 ========
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2143
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2144 Assign ranks to data, dealing with ties appropriately.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2145
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2146 Ranks begin at 1. The method argument controls how ranks are assigned to equal values. See [R308] for further discussion of ranking methods.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2147
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2148 The output are:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2149
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2150 ranks : ndarray
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2151
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2152 An array of length equal to the size of a, containing rank scores.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2153
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2154 example:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2155
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2156 stats.rankdata([4,17,8,3],average)the result is ([ 2. 4. 3. 1.])
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2157
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2158 =======
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2159 kruskal
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2160 =======
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2161
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2162 Compute the Kruskal-Wallis H-test for independent samples
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2163
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2164 The Kruskal-Wallis H-test tests the null hypothesis that the population median of all of the groups are equal. It is a non-parametric version of ANOVA.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2165
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2166 The number of samples have to be more than one
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2167
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2168 The output are:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2169
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2170 H-statistic : float
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2171
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2172 The Kruskal-Wallis H statistic, corrected for ties
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2173
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2174 p-value : float
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2175
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2176 The p-value for the test using the assumption that H has a chi square distribution
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2177
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2178
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2179 example:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2180
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2181 stats. kruskal([4,17,8,3], [30,45,5,3]) the result is (0.527108433735,0.467825077285)
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2182
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2183 ==================
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2184 friedmanchisquare
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2185 ==================
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2186
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2187 Computes the Friedman test for repeated measurements
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2188
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2189 The Friedman test tests the null hypothesis that repeated measurements of the same individuals have the same distribution. It is often used to test for consistency among measurements obtained in different ways.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2190
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2191 The number of samples have to be more than two.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2192
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2193 The output are:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2194
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2195 friedman chi-square statistic : float
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2196
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2197 the test statistic, correcting for ties
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2198
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2199 p-value : float
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2200
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2201 the associated p-value assuming that the test statistic has a chi squared distribution
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2202
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2203
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2204 example:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2205
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2206 stats.friedmanchisquare([4,17,8,3],[8,3,30,45],[30,45,5,3])the result is (0.933333333333,0.627089085273)
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2207
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2208 =====
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2209 mood
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2210 =====
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2211
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2212 Perform Mood’s test for equal scale parameters.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2213
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2214 Mood’s two-sample test for scale parameters is a non-parametric test for the null hypothesis that two samples are drawn from the same distribution with the same scale parameter.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2215
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2216 -----
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2217
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2218 Computes the Mood’s test for equal scale samples x and y.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2219
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2220 The output are:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2221
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2222 z : scalar or ndarray
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2223
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2224 The z-score for the hypothesis test. For 1-D inputs a scalar is returned;
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2225
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2226 p-value : scalar ndarray
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2227
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2228 The p-value for the hypothesis test.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2229
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2230 example:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2231
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2232 mood([4,417,8,3],[30,45,5,3]) the result is (0.396928310068,0.691420327045)
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2233
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2234 ===============
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2235 combine_pvalues
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2236 ===============
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2237
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2238 Methods for combining the p-values of independent tests bearing upon the same hypothesis.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2239
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2240
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2241 The output are:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2242
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2243 statistic: float
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2244
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2245 The statistic calculated by the specified method: - “fisher”: The chi-squared statistic - “stouffer”: The Z-score
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2246
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2247 pval: float
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2248
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2249 The combined p-value.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2250
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2251 example:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2252
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2253 stats.combine_pvalues([4,17,8,3],method='fisher',weights=[5,6,7,8]) the result is (-14.795123071,1.0)
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2254
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2255 ===========
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2256 median test
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2257 ===========
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2258
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2259 Mood’s median test.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2260
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2261 Test that two or more samples come from populations with the same median.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2262
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2263 The output are:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2264
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2265 stat : float
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2266
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2267 The test statistic. The statistic that is returned is determined by lambda. The default is Pearson’s chi-squared statistic.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2268
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2269 p : float
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2270
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2271 The p-value of the test.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2272
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2273 m : float
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2274
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2275 The grand median.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2276
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2277 table : ndarray
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2278
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2279 The contingency table.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2280
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2281
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2282 example:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2283
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2284 stats.median_test(ties='below',correction=True ,lambda=1,*a)the result is ((0.0, 1.0, 6.5, array([[2, 2],[2, 2]])))
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2285
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2286 ========
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2287 shapiro
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2288 ========
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2289
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2290 Perform the Shapiro-Wilk test for normality.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2291
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2292 The Shapiro-Wilk test tests the null hypothesis that the data was drawn from a normal distribution.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2293
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2294 -----
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2295
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2296 Computes the Shapiro-Wilk test for samples x and y.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2297
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2298 If x has length n, then y must have length n/2.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2299
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2300 The output are:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2301
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2302 W : float
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2303
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2304 The test statistic.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2305
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2306 p-value : float
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2307
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2308 The p-value for the hypothesis test.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2309
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2310
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2311 example:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2312
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2313 shapiro([4,417,8,3]) the result is (0.66630089283, 0.00436889193952)
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2314
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2315 ========
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2316 anderson
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2317 ========
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2318
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2319 Anderson-Darling test for data coming from a particular distribution
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2320
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2321 The Anderson-Darling test is a modification of the Kolmogorov- Smirnov test kstest for the null hypothesis that a sample is drawn from a population that follows a particular distribution. For the Anderson-Darling test, the critical values depend on which distribution is being tested against. This function works for normal, exponential, logistic, or Gumbel (Extreme Value Type I) distributions.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2322
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2323 -----
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2324
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2325 Computes the Anderson-Darling test for samples x which comes from a specific distribution..
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2326
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2327 The output are:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2328
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2329
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2330 A2 : float
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2331
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2332 The Anderson-Darling test statistic
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2333
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2334 critical : list
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2335
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2336 The critical values for this distribution
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2337
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2338 sig : list
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2339
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2340 The significance levels for the corresponding critical values in percents. The function returns critical values for a differing set of significance levels depending on the distribution that is being tested against.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2341
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2342 example:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2343
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2344 anderson([4,417,8,3],norm) the result is (0.806976419634,[ 1.317 1.499 1.799 2.098 2.496] ,[ 15. 10. 5. 2.5 1. ])
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2345
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2346 ==========
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2347 binom_test
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2348 ==========
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2349
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2350 Perform a test that the probability of success is p.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2351
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2352 This is an exact, two-sided test of the null hypothesis that the probability of success in a Bernoulli experiment is p.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2353
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2354 he binomial test is an exact test of the statistical significance of deviations from a theoretically expected distribution of observations into two categories.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2355
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2356 -----
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2357
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2358 Computes the test for the probability of success is p .
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2359
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2360 The output are:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2361
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2362 p-value : float
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2363
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2364 The p-value of the hypothesis test
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2365
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2366 example:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2367
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2368 binom_test([417,8],1,0.5) the result is (5.81382734132e-112)
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2369
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2370 ========
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2371 pearsonr
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2372 ========
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2373
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2374 Calculates a Pearson correlation coefficient and the p-value for testing non-correlation.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2375
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2376 The Pearson correlation coefficient measures the linear relationship between two datasets.The value of the correlation (i.e., correlation coefficient) does not depend on the specific measurement units used.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2377
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2378 The output are:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2379
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2380 Pearson’s correlation coefficient: float
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2381
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2382 2-tailed p-value: float
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2383
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2384
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2385 example:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2386
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2387 pearsonr([4,17,8,3],[30,45,5,3]) the result is (0.695092958988,0.304907041012)
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2388
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2389 ========
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2390 wilcoxon
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2391 ========
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2392
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2393 Calculate the Wilcoxon signed-rank test.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2394
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2395 The Wilcoxon signed-rank test tests the null hypothesis that two related paired samples come from the same distribution. In particular, it tests whether the distribution of the differences x - y is symmetric about zero. It is a non-parametric version of the paired T-test.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2396
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2397 The output are:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2398
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2399 T : float
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2400
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2401 The sum of the ranks of the differences above or below zero, whichever is smaller.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2402
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2403 p-value : float
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2404
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2405 The two-sided p-value for the test.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2406
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2407
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2408 example:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2409
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2410 stats.wilcoxon([3,6,23,70,20,55,4,19,3,6],
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2411 [23,70,20,55,4,19,3,6,23,70],zero_method='pratt',correction=True) the result is (23.0, 0.68309139830960874)
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2412
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2413 ==============
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2414 pointbiserialr
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2415 ==============
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2416
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2417 Calculates a Pearson correlation coefficient and the p-value for testing non-correlation.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2418
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2419 The Pearson correlation coefficient measures the linear relationship between two datasets.The value of the correlation (i.e., correlation coefficient) does not depend on the specific measurement units used.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2420 The output are:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2421
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2422 r : float
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2423
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2424 R value
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2425
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2426 p-value : float
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2427
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2428 2-tailed p-value
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2429
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2430
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2431 example:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2432
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2433 pointbiserialr([0,0,0,1,1,1,1],[1,0,1,2,3,4,5]) the result is (0.84162541153017323, 0.017570710081214368)
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2434
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2435 ========
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2436 ks_2samp
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2437 ========
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2438
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2439 Computes the Kolmogorov-Smirnov statistic on 2 samples.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2440
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2441 This is a two-sided test for the null hypothesis that 2 independent samples are drawn from the same continuous distribution.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2442
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2443 If the K-S statistic is small or the p-value is high, then we cannot reject the hypothesis that the distributions of the two samples are the same.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2444
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2445 The output are:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2446
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2447 D : float
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2448
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2449 KS statistic
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2450
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2451 p-value : float
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2452
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2453 two-tailed p-value
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2454
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2455
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2456 example:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2457
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2458 ks_2samp([4,17,8,3],[30,45,5,3]) the result is (0.5,0.534415719217)
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2459
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2460 ==========
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2461 kendalltau
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2462 ==========
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2463
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2464 Calculates Kendall’s tau, a correlation measure for sample x and sample y.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2465
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2466 sample x and sample y should be in the same size.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2467
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2468 Kendall’s tau is a measure of the correspondence between two rankings. Values close to 1 indicate strong agreement, values close to -1 indicate strong disagreement. This is the tau-b version of Kendall’s tau which accounts for ties.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2469
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2470
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2471 The output are:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2472
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2473 Kendall’s tau : float
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2474
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2475 The tau statistic.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2476
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2477 p-value : float
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2478
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2479 The two-sided p-value for a hypothesis test whose null hypothesis is an absence of association, tau = 0.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2480
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2481
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2482 example:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2483
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2484 kendalltau([4,17,8,3],[30,45,5,3])，the result is (0.666666666667,0.174231399708)
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2485
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2486 ================
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2487 chi2_contingency
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2488 ================
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2489
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2490 Chi-square test of independence of variables in a contingency table.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2491
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2492 This function computes the chi-square statistic and p-value for the hypothesis test of independence of the observed frequencies in the contingency table observed.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2493
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2494 The output are:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2495
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2496 chi2 : float
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2497
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2498 The test statistic.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2499
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2500 p : float
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2501
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2502 The p-value of the test
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2503
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2504 dof : int
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2505
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2506 Degrees of freedom
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2507
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2508 expected : ndarray, same shape as observed
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2509
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2510 The expected frequencies, based on the marginal sums of the table.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2511
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2512 example:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2513
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2514 stats.chi2_contingency([4,17,8,3],1)the result is (0.0, 1.0, 0, array([ 4., 17., 8., 3.]))
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2515
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2516 ======
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2517 boxcox
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2518 ======
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2519
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2520 Return a positive dataset transformed by a Box-Cox power transformation
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2521
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2522 The output are:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2523
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2524 boxcox : ndarray
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2525
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2526 Box-Cox power transformed array.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2527
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2528 maxlog : float, optional
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2529
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2530 If the lmbda parameter is None, the second returned argument is the lambda that maximizes the log-likelihood function.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2531
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2532 (min_ci, max_ci) : tuple of float, optional
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2533
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2534 If lmbda parameter is None and alpha is not None, this returned tuple of floats represents the minimum and maximum confidence limits given alpha.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2535
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2536
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2537 example:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2538
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2539 stats.boxcox([4,17,8,3],0.9) the result is ([ 1.03301717 1.60587825 1.35353026 0.8679017 ],-0.447422166194,(-0.5699221654511225, -0.3259515659400082))
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2540
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2541 ==============
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2542 boxcox normmax
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2543 ==============
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2544
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2545 Compute optimal Box-Cox transform parameter for input data
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2546
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2547 The output are:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2548
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2549 maxlog : float or ndarray
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2550
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2551 The optimal transform parameter found. An array instead of a scalar for method='all'.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2552
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2553
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2554 example:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2555
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2556 stats.boxcox_normmax([4,17,8,3],(-2,2),'pearsonr')the result is (-0.702386238971)
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2557
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2558 ==========
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2559 boxcox llf
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2560 ==========
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2561
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2562 The boxcox log-likelihood function
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2563
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2564 The output are:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2565
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2566 llf : float or ndarray
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2567
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2568 Box-Cox log-likelihood of data given lmb. A float for 1-D data, an array otherwise.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2569
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2570 example:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2571
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2572 stats.boxcox_llf(1,[4,17,8,3]) the result is (-6.83545336723)
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2573
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2574 =======
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2575 entropy
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2576 =======
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2577
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2578 Calculate the entropy of a distribution for given probability values.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2579
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2580 If only probabilities pk are given, the entropy is calculated as S = -sum(pk * log(pk), axis=0).
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2581
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2582 If qk is not None, then compute the Kullback-Leibler divergence S = sum(pk * log(pk / qk), axis=0).
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2583
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2584 This routine will normalize pk and qk if they don’t sum to 1.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2585
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2586 The output are:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2587
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2588 S : float
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2589
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2590 The calculated entropy.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2591
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2592
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2593 example:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2594
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2595 stats.entropy([4,17,8,3],[30,45,5,3],1.6)the result is (0.641692653659)
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2596
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2597 ======
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2598 kstest
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2599 ======
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2600
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2601 Perform the Kolmogorov-Smirnov test for goodness of fit.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2602
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2603 The output are:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2604
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2605 D : float
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2606
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2607 KS test statistic, either D, D+ or D-.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2608
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2609 p-value : float
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2610
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2611 One-tailed or two-tailed p-value.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2612
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2613 example:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2614
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2615 stats.kstest([4,17,8,3],'norm',N=20,alternative='two-sided',mode='approx')the result is (0.998650101968,6.6409100441e-12)
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2616
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2617 ===========
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2618 theilslopes
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2619 ===========
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2620
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2621 Computes the Theil-Sen estimator for a set of points (x, y).
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2622
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2623 theilslopes implements a method for robust linear regression. It computes the slope as the median of all slopes between paired values.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2624
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2625 The output are:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2626
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2627 medslope : float
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2628
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2629 Theil slope.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2630
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2631 medintercept : float
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2632
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2633 Intercept of the Theil line, as median(y) - medslope*median(x).
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2634
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2635 lo_slope : float
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2636
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2637 Lower bound of the confidence interval on medslope.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2638
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2639 up_slope : float
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2640
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2641 Upper bound of the confidence interval on medslope.
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2642
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2643 example:
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2644
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2645 stats.theilslopes([4,17,8,3],[30,45,5,3],0.95)the result is (0.279166666667,1.11458333333,-0.16,2.5)
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2646
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2647 </help>
a3d8cadaf060 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/statistics commit 7c5002672919ca1e5eacacb835a4ce66ffa19656 bgruening parents: diff changeset	2648 </tool>

Mercurial > repos > bgruening > bg_statistical_hypothesis_testing

annotate statistical_hypothesis_testing.xml @ 0:a3d8cadaf060 draft default tip