Mercurial > repos > bgruening > bedtools_test_bag

annotate randomBed.xml @ 12:c782e0edc4f1 draft default tip

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author bgruening
date Thu, 19 Jun 2014 10:12:00 -0400
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12
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1 <tool id="bedtools_randombed" name="RandomBed" version="@WRAPPER_VERSION@.0">
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2 <description></description>
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3 <macros>
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4 <import>macros.xml</import>
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5 </macros>
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6 <expand macro="requirements" />
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7 <expand macro="stdio" />
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8 <command>
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9 bedtools random
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10 -g $genome
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11 -l $length
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12 -n $intervals
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13 #if $seed.choose:
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14 -seed $seed.seed
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15 #end if
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16 </command>
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17 <inputs>
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18 <expand macro="genome" />
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19 <param name="length" type="integer" value="100" label="The length of the intervals to generate." />
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20 <param name="intervals" type="integer" value="1000000" label="The number of intervals to generate." />
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21 <expand macro="seed" />
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22 </inputs>
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23 <outputs>
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24 <data format="bed" name="output" />
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25 </outputs>
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26 <help>
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27
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28 **What it does**
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29
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30 bedtools random will generate a random set of intervals in BED6 format. One can specify both the number (-n) and the size (-l) of the intervals that should be generated.
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31
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32 @REFERENCES@
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33 </help>
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34 </tool>