Mercurial > repos > bgruening > bedtools_test_bag
diff randomBed.xml @ 6:75d323631dce draft
Uploaded
| author | bernhardlutz |
|---|---|
| date | Wed, 18 Jun 2014 12:40:28 -0400 |
| parents | |
| children | c782e0edc4f1 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/randomBed.xml Wed Jun 18 12:40:28 2014 -0400 @@ -0,0 +1,35 @@ +<tool id="bedtools_randombed" name="RandomBed" version="0.2.0"> + <description></description> + <macros> + <import>macros.xml</import> + </macros> + <expand macro="requirements" /> + <expand macro="stdio" /> + <command> + bedtools random + -g $genome + -l $length + -n $intervals + #if $seed.choose: + -seed $seed.seed + #end if + </command> + <inputs> + <expand macro="genome" /> + <param name="length" type="integer" value="100" label="The length of the intervals to generate." /> + <param name="intervals" type="integer" value="1000000" label="The number of intervals to generate." /> + <expand macro="seed" /> + </inputs> + <outputs> + <data format="bed" name="output" /> + + </outputs> + <help> + +**What it does** + +bedtools random will generate a random set of intervals in BED6 format. One can specify both the number (-n) and the size (-l) of the intervals that should be generated. + +@REFERENCES@ + </help> +</tool>
