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changeset 18:63e6d7aefbe6 draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/sortmerna commit 044a991b45c9135339daf138929887cd8e93a1bf-dirty
author bebatut
date Mon, 12 Jun 2017 07:54:51 -0400
parents 715c75d6d784
children 4f476a49f079
files sortmerna.xml
diffstat 1 files changed, 4 insertions(+), 4 deletions(-) [+]
line wrap: on
line diff
--- a/sortmerna.xml	Mon Jun 12 07:49:01 2017 -0400
+++ b/sortmerna.xml	Mon Jun 12 07:54:51 2017 -0400
@@ -37,15 +37,15 @@
     #else if str( $databases_type.databases_selector ) == 'cached_to_index'
         ## databases path is not directly accessible, must match by hand with LOC file contents
         #set $data_table = dict([(_[0], _[2]) for _ in $databases_type.input_databases.input.options.tool_data_table.data])
-        #for $db in $databases_type.input_databases.value
-            #set $ref += $sep + $databases_type.input_databases.fields.path + '.fasta,' + $databases_type.input_databases.fields.path + '-reindexed'
+        #for $db in $databases_type.input_databases.fields.path.split(",")
+            #set $ref += $sep + $db + '.fasta,' + $db + '-reindexed'
             #set $sep = ':'
         #end for
     #else:
         ## databases path is not directly accessible, must match by hand with LOC file contents
         #set $data_table = dict([(_[0], _[2]) for _ in $databases_type.input_databases.input.options.tool_data_table.data])
-        #for $db in $databases_type.input_databases.value
-            #set $ref += $sep + $databases_type.input_databases.fields.path + '.fasta,' + $databases_type.input_databases.fields.path
+        #for $db in $databases_type.input_databases.fields.path.split(",")
+            #set $ref += $sep + $db + '.fasta,' + $db
             #set $sep = ':'
         #end for
     #end if