# HG changeset patch
# User bebatut
# Date 1497268491 14400
# Node ID 63e6d7aefbe6eba4b74b6086bc2466714652a0b2
# Parent  715c75d6d784099b4c287140eee55c97719cc3bd
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/sortmerna commit 044a991b45c9135339daf138929887cd8e93a1bf-dirty

diff -r 715c75d6d784 -r 63e6d7aefbe6 sortmerna.xml
--- a/sortmerna.xml	Mon Jun 12 07:49:01 2017 -0400
+++ b/sortmerna.xml	Mon Jun 12 07:54:51 2017 -0400
@@ -37,15 +37,15 @@
     #else if str( $databases_type.databases_selector ) == 'cached_to_index'
         ## databases path is not directly accessible, must match by hand with LOC file contents
         #set $data_table = dict([(_[0], _[2]) for _ in $databases_type.input_databases.input.options.tool_data_table.data])
-        #for $db in $databases_type.input_databases.value
-            #set $ref += $sep + $databases_type.input_databases.fields.path + '.fasta,' + $databases_type.input_databases.fields.path + '-reindexed'
+        #for $db in $databases_type.input_databases.fields.path.split(",")
+            #set $ref += $sep + $db + '.fasta,' + $db + '-reindexed'
             #set $sep = ':'
         #end for
     #else:
         ## databases path is not directly accessible, must match by hand with LOC file contents
         #set $data_table = dict([(_[0], _[2]) for _ in $databases_type.input_databases.input.options.tool_data_table.data])
-        #for $db in $databases_type.input_databases.value
-            #set $ref += $sep + $databases_type.input_databases.fields.path + '.fasta,' + $databases_type.input_databases.fields.path
+        #for $db in $databases_type.input_databases.fields.path.split(",")
+            #set $ref += $sep + $db + '.fasta,' + $db
             #set $sep = ':'
         #end for
     #end if