Mercurial > repos > bebatut > sortmerna

comparison tool-data/sortmerna_rRNA_databases.loc.sample @ 6:817fb14fc739 draft

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planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/sortmerna/ commit 2feea380531495c52455aade9761b0390c235c9b-dirty
author bebatut
date Thu, 05 Nov 2015 08:31:34 -0500
parents 16dacde7336c
children
comparison
equal deleted inserted replaced
5:064dbe9f9333 6:817fb14fc739
19 # 19 #
20 #Since SortMeRNA comes bundled with eight ribosomal databases, you can use them 20 #Since SortMeRNA comes bundled with eight ribosomal databases, you can use them
21 #by creating the actual index files as explained above and uncommenting the 21 #by creating the actual index files as explained above and uncommenting the
22 #following lines. 22 #following lines.
23 23
24 rfam-5.8s-id98 Rfam 5.8S eukarya tools/manipulate_rna/sortmerna/sortmerna/rRNA_databases/rfam-5.8s-database-id98.fasta 24 rfam-5.8s-id98 Rfam 5.8S eukarya $SORTMERNADIR//rRNA_databases/rfam-5.8s-database-id98.fasta
25 rfam-5s-id98 Rfam 5S archaea/bacteria tools/manipulate_rna/sortmerna/sortmerna/rRNA_databases/rfam-5s-database-id98.fasta 25 rfam-5s-id98 Rfam 5S archaea/bacteria $SORTMERNADIR/rRNA_databases/rfam-5s-database-id98.fasta
26 silva-arc-16s-id95 SILVA v.119 16S archaea tools/manipulate_rna/sortmerna/sortmerna/rRNA_databases/silva-arc-16s-id95.fasta 26 silva-arc-16s-id95 SILVA v.119 16S archaea $SORTMERNADIR/rRNA_databases/silva-arc-16s-id95.fasta
27 silva-arc-23s-id98 SILVA v.119 23S archaea tools/manipulate_rna/sortmerna/sortmerna/rRNA_databases/silva-arc-23s-id98.fasta 27 silva-arc-23s-id98 SILVA v.119 23S archaea $SORTMERNADIR/rRNA_databases/silva-arc-23s-id98.fasta
28 silva-bac-16s-id90 SILVA v.119 16S bacteria tools/manipulate_rna/sortmerna/sortmerna/rRNA_databases/silva-bac-16s-id90.fasta 28 silva-bac-16s-id90 SILVA v.119 16S bacteria $SORTMERNADIR/rRNA_databases/silva-bac-16s-id90.fasta
29 silva-bac-23s-id98 SILVA v.119 23S bacteria tools/manipulate_rna/sortmerna/sortmerna/rRNA_databases/silva-bac-23s-id98.fasta 29 silva-bac-23s-id98 SILVA v.119 23S bacteria $SORTMERNADIR/rRNA_databases/silva-bac-23s-id98.fasta
30 silva-euk-18s-id95 SILVA v.119 18S eukarya tools/manipulate_rna/sortmerna/sortmerna/rRNA_databases/silva-euk-18s-id95.fasta 30 silva-euk-18s-id95 SILVA v.119 18S eukarya $SORTMERNADIR/rRNA_databases/silva-euk-18s-id95.fasta
31 silva-euk-28s-id98 SILVA v.119 28S eukarya tools/manipulate_rna/sortmerna/sortmerna/rRNA_databases/silva-euk-28s-id98.fasta 31 silva-euk-28s-id98 SILVA v.119 28S eukarya $SORTMERNADIR/rRNA_databases/silva-euk-28s-id98.fasta