Mercurial > repos > bebatut > plot_barplot
changeset 2:f8cec112f5f9 draft
planemo upload for repository https://github.com/asaim/galaxytools/tree/master/tools/plot_barplot commit 5c45ed58045ce1686aa069403f8a9426ea20bac5-dirty
| author | bebatut |
|---|---|
| date | Tue, 12 Apr 2016 03:09:36 -0400 |
| parents | 7c1274bf54c6 |
| children | 81d4e20b0b23 |
| files | plot_barplot.R plot_barplot.xml |
| diffstat | 2 files changed, 9 insertions(+), 2 deletions(-) [+] |
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--- a/plot_barplot.R Wed Mar 02 05:40:17 2016 -0500 +++ b/plot_barplot.R Tue Apr 12 03:09:36 2016 -0400 @@ -12,12 +12,16 @@ 'bottom_margin', 'b', 2, 'integer', 'left_margin', 'l', 2, 'integer', 'top_margin', 't', 2, 'integer', - 'right_margin', 'r', 2, 'integer' + 'right_margin', 'r', 2, 'integer', + 'header','y',2,'logical' ), byrow=TRUE, ncol=4); options = getopt(option_specification); -data = read.table(options$input_file, sep = '\t', h = T) +header = TRUE +if(!is.null(options$header)) header = options$header + +data = read.table(options$input_file, sep = '\t', h = header) data_column = 2 if(!is.null(options$data_column)) data_column = options$data_column
--- a/plot_barplot.xml Wed Mar 02 05:40:17 2016 -0500 +++ b/plot_barplot.xml Tue Apr 12 03:09:36 2016 -0400 @@ -16,6 +16,7 @@ <command><![CDATA[ Rscript $__tool_directory__/plot_barplot.R --input_file $input_file + --header $header #if str($output_format)=="pdf" --output_pdf_file $output_pdf_file @@ -37,6 +38,8 @@ <inputs> <param name="input_file" type="data" format="tabular,tsv,csv" label="Input file" help="File in tabular format with tab-separated columns and header in first line (--input_file)"/> + <param name="header" type="boolean" truevalue="TRUE" falsevalue="FALSE" checked="false" label="Header in first line?" help="(--header)"/> + <param name="output_format" label="Format for output image" type="select" help=""> <option value="pdf" selected="True">PDF</option> <option value="svg">SVG</option>