Mercurial > repos > bebatut > package_rdptools_2_0_2

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planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/packages/package_rdptools_2_0_2 commit 0b70097b8f61a995378c409fe3aa2a1663a47906-dirty
author bebatut
date Tue, 10 Nov 2015 04:50:06 -0500
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0ba421d19a18 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/packages/package_rdptools_2_0_2 commit 0b70097b8f61a995378c409fe3aa2a1663a47906-dirty
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1 <?xml version="1.0"?>
0ba421d19a18 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/packages/package_rdptools_2_0_2 commit 0b70097b8f61a995378c409fe3aa2a1663a47906-dirty
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2 <tool_dependency>
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3 <package name="ant" version="1.9.6">
0ba421d19a18 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/packages/package_rdptools_2_0_2 commit 0b70097b8f61a995378c409fe3aa2a1663a47906-dirty
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4 <repository changeset_revision="c49abc8cead0" name="package_ant_1_9_6" owner="bebatut" toolshed="https://testtoolshed.g2.bx.psu.edu" />
0ba421d19a18 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/packages/package_rdptools_2_0_2 commit 0b70097b8f61a995378c409fe3aa2a1663a47906-dirty
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5 </package>
0ba421d19a18 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/packages/package_rdptools_2_0_2 commit 0b70097b8f61a995378c409fe3aa2a1663a47906-dirty
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6 <package name="rdptools" version="2.0.2">
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7 <install version="1.0">
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8 <actions>
0ba421d19a18 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/packages/package_rdptools_2_0_2 commit 0b70097b8f61a995378c409fe3aa2a1663a47906-dirty
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9 <action type="shell_command">git clone --recursive https://github.com/rdpstaff/RDPTools.git rdptools</action>
0ba421d19a18 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/packages/package_rdptools_2_0_2 commit 0b70097b8f61a995378c409fe3aa2a1663a47906-dirty
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10 <action type="change_directory">rdptools</action>
0ba421d19a18 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/packages/package_rdptools_2_0_2 commit 0b70097b8f61a995378c409fe3aa2a1663a47906-dirty
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11 <action type="shell_command">git checkout 2.0.2</action>
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12 <action type="shell_command">git submodule update --init</action>
0ba421d19a18 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/packages/package_rdptools_2_0_2 commit 0b70097b8f61a995378c409fe3aa2a1663a47906-dirty
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13 <action type="shell_command">make</action>
0ba421d19a18 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/packages/package_rdptools_2_0_2 commit 0b70097b8f61a995378c409fe3aa2a1663a47906-dirty
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14 <action type="change_directory">../</action>
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15 <action type="shell_command">mv rdptools/ $INSTALL_DIR/</action>
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16 <action type="set_environment">
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17 <environment_variable action="set_to" name="RDP_TOOLS_DIR">$INSTALL_DIR/rdptools/</environment_variable>
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18 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
0ba421d19a18 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/packages/package_rdptools_2_0_2 commit 0b70097b8f61a995378c409fe3aa2a1663a47906-dirty
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19 </action>
0ba421d19a18 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/packages/package_rdptools_2_0_2 commit 0b70097b8f61a995378c409fe3aa2a1663a47906-dirty
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20 </actions>
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21 </install>
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22 <readme>
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23 RDPTols is an open source command-line tool suite for performing a complete
0ba421d19a18 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/packages/package_rdptools_2_0_2 commit 0b70097b8f61a995378c409fe3aa2a1663a47906-dirty
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24 workflow of analysis tasks of NGS data.
0ba421d19a18 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/packages/package_rdptools_2_0_2 commit 0b70097b8f61a995378c409fe3aa2a1663a47906-dirty
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25
0ba421d19a18 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/packages/package_rdptools_2_0_2 commit 0b70097b8f61a995378c409fe3aa2a1663a47906-dirty
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26 Clone the github repository and configure the tools.
0ba421d19a18 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/packages/package_rdptools_2_0_2 commit 0b70097b8f61a995378c409fe3aa2a1663a47906-dirty
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27
0ba421d19a18 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/packages/package_rdptools_2_0_2 commit 0b70097b8f61a995378c409fe3aa2a1663a47906-dirty
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28 For more details, see:
0ba421d19a18 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/packages/package_rdptools_2_0_2 commit 0b70097b8f61a995378c409fe3aa2a1663a47906-dirty
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29 https://github.com/rdpstaff/RDPTools
0ba421d19a18 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/packages/package_rdptools_2_0_2 commit 0b70097b8f61a995378c409fe3aa2a1663a47906-dirty
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30 </readme>
0ba421d19a18 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/packages/package_rdptools_2_0_2 commit 0b70097b8f61a995378c409fe3aa2a1663a47906-dirty
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31 </package>
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32 </tool_dependency>