Mercurial > repos > bebatut > package_humann2_0_5_0

annotate tool_dependencies.xml @ 0:831d511bc7a0 draft default tip

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planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/packages/package_humann2_0_5_0 commit 11b919f18ba85a40ff0ff4df82aac9be6da188c5-dirty
author bebatut
date Thu, 31 Mar 2016 03:20:53 -0400
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831d511bc7a0 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/packages/package_humann2_0_5_0 commit 11b919f18ba85a40ff0ff4df82aac9be6da188c5-dirty
bebatut
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1 <?xml version="1.0"?>
831d511bc7a0 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/packages/package_humann2_0_5_0 commit 11b919f18ba85a40ff0ff4df82aac9be6da188c5-dirty
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2 <tool_dependency>
831d511bc7a0 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/packages/package_humann2_0_5_0 commit 11b919f18ba85a40ff0ff4df82aac9be6da188c5-dirty
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3 <package name="humann2" version="0.5.0">
831d511bc7a0 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/packages/package_humann2_0_5_0 commit 11b919f18ba85a40ff0ff4df82aac9be6da188c5-dirty
bebatut
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4 <install version="1.0">
831d511bc7a0 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/packages/package_humann2_0_5_0 commit 11b919f18ba85a40ff0ff4df82aac9be6da188c5-dirty
bebatut
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5 <actions>
831d511bc7a0 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/packages/package_humann2_0_5_0 commit 11b919f18ba85a40ff0ff4df82aac9be6da188c5-dirty
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6 <action type="download_by_url">https://bitbucket.org/biobakery/humann2/downloads/humann2_v0.5.0.tar.gz</action>
831d511bc7a0 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/packages/package_humann2_0_5_0 commit 11b919f18ba85a40ff0ff4df82aac9be6da188c5-dirty
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7 <action type="make_directory">$INSTALL_DIR/lib/python</action>
831d511bc7a0 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/packages/package_humann2_0_5_0 commit 11b919f18ba85a40ff0ff4df82aac9be6da188c5-dirty
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8 <action type="shell_command">
831d511bc7a0 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/packages/package_humann2_0_5_0 commit 11b919f18ba85a40ff0ff4df82aac9be6da188c5-dirty
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9 export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp;
831d511bc7a0 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/packages/package_humann2_0_5_0 commit 11b919f18ba85a40ff0ff4df82aac9be6da188c5-dirty
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10 python setup.py install --bypass-dependencies-install --install-lib $INSTALL_DIR/lib/python --install-scripts=$INSTALL_DIR/</action>
831d511bc7a0 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/packages/package_humann2_0_5_0 commit 11b919f18ba85a40ff0ff4df82aac9be6da188c5-dirty
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11 <action type="make_directory">$INSTALL_DIR/databases</action>
831d511bc7a0 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/packages/package_humann2_0_5_0 commit 11b919f18ba85a40ff0ff4df82aac9be6da188c5-dirty
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12 <action type="set_environment">
831d511bc7a0 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/packages/package_humann2_0_5_0 commit 11b919f18ba85a40ff0ff4df82aac9be6da188c5-dirty
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13 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>
831d511bc7a0 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/packages/package_humann2_0_5_0 commit 11b919f18ba85a40ff0ff4df82aac9be6da188c5-dirty
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14 <environment_variable name="HUMANN2_DIR" action="set_to">$INSTALL_DIR/</environment_variable>
831d511bc7a0 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/packages/package_humann2_0_5_0 commit 11b919f18ba85a40ff0ff4df82aac9be6da188c5-dirty
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15 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/</environment_variable>
831d511bc7a0 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/packages/package_humann2_0_5_0 commit 11b919f18ba85a40ff0ff4df82aac9be6da188c5-dirty
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16 </action>
831d511bc7a0 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/packages/package_humann2_0_5_0 commit 11b919f18ba85a40ff0ff4df82aac9be6da188c5-dirty
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17 </actions>
831d511bc7a0 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/packages/package_humann2_0_5_0 commit 11b919f18ba85a40ff0ff4df82aac9be6da188c5-dirty
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18 </install>
831d511bc7a0 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/packages/package_humann2_0_5_0 commit 11b919f18ba85a40ff0ff4df82aac9be6da188c5-dirty
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19 <readme></readme>
831d511bc7a0 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/packages/package_humann2_0_5_0 commit 11b919f18ba85a40ff0ff4df82aac9be6da188c5-dirty
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20 </package>
831d511bc7a0 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/packages/package_humann2_0_5_0 commit 11b919f18ba85a40ff0ff4df82aac9be6da188c5-dirty
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21 </tool_dependency>